Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1546 ATGGGGAGCATGGGTGAGTCGGACAGAAAACGGCGTCACTTTAGCTCCTTGTCACCTACGGCAGCACCTGCTACTGCCAAAAAGCTACCTTTATTACCCATTTCTGAAGACAAAAAGCTTGATATTGCTGTGCTTCAGTTTCAAAATCAAAAGCTTATGCAGAAATTAGAGACACAGAAGTTAGAATATACAGCGCTTGAGGATAAATTTTCTCAATTGAAGGAGAGGCAACAGTCATATGACTCTAATTTAGCAGTGGTCAAGAAGAACTGGGAACAGCTGGTAAATGACTTGGAGTTGTGTTCTGAAAGCGCAAGAGAGTCTAGCAGCAACTTGGATTCGAGATATGCATTAGTCACAAGTGATGGTAGTCCATCAACTGTTCAGGATGTTTTTCTTAGCCGACTTTTGCAAACTGGTGCAACTGAAAGTTCCTCTACATATAACTGTGCAAACCAGGTGGAAGAGCACAGAGAAATTACTTCTGAGAAAGAAAAAAGCATTTTAGAAAATATAGCCACAACTATTAATAACTTCTGGCATGTGAAGGGTGTATTACATACTGCTACACTGAAAAAGCTTCCTGGAGATGTTTCATGCAGGCAGAAGTTGTCTACTGATTTAGAGGTGGAAGTTAAAAACTTGCGGTTGGCATTTGGTGAGCTTCATTTGAAGCACAAGTCTTTTGCGAGTGAGTACCAAGTTCACAGAGATCTTGATGCCAAAAATAAAGCAGAACTGCGAAGACTAAAAGGGGAACTTGAAAGCACTGTTGCAGAATTAGAAGAAAGCAATCACAAACTTTTAACCTTTAAGGCAGAGAGAGATGCAGCAAAAGGGGCGGTTCTCCCTGTCCTAAATGTAGGAACTGCATGCACTGCTAGTGATAAGGTCCGAGAAAAGCAAAAGGACTTGCAAGATATGGAATCTGCGTTGAAGGAGCTATTGGAACAAGGTTTATCTCAATTACTGGAACTGAAAAGTCTCCATGAGGAGAGAATAAGAATATTACAGCAGTTGTGTGATCTACAGAACACATTGAAGAATTTGGAGTGTATTACTTCTTCCCATGCGTTCAAATTGGTTAGGGATCAGATCGAAAAATCCAAATCAGAAGTTCTTCAGTATCAAGCTTTATTTGAGAAACTACAGGTTGAGAAGGATAATCTTGTATGGAGGGAACGCGAGTGGTACATGAAAAGTGATTTAGCAGATCTTTTTCAAAGATCTGCTGTGGTTTCTGATTCTAGAGCGGCTGATTTACGGACTGAGATACAAAAAAAGATAGACGAAAGAAATGTGATTGAAAATAAATTGCATGAGGAAGCAAGAGAACCGGGAAGGAATCAAATTATAGCAGAATTTAAATCTTTGCTTTCTTCATTTCCTGAAGAAATGGGATCTATGCAAAGTCAGTTAAGTAAGTATAAAGAATCAGCTTCCGATATCCATTCTCTGCGTGCAGATGTGCAGTCTATTTCTAATGTTCTTGAAAGGAAGGTAAAAGAATGTGATGCCTTAACTGTTAGGTGTGCTGATCAAGCTGCTGAAATAAAGAGGCTGCTTGCTGTGGCTCAAGATTTGAGACAGTGTGAGCAGGATTTGAAGTTGATACTGCGCATGTATAGACGTGAGTCCATTGATTCAAGGGATGTGATGGAAGTCCGGGATGCAGAATACCGAGCATGGGCCAATGTTCAAAGTTTGAAATCTTCTCTTGATGAGCATCAGTTAGAACTTCGAGTTAAGACAGCAAATGAAGCAGAGGCCAAATCCCAACAAAGGCTGGCTGCTGCTGAAGCTGAGATAGCAGACATGAGACAGAAATTAGAAGCTTCCAAAAAGGAGATGTGTAAATTATCTGATGTCTTGAGATCAAAAAACGAAGAGAATGAGGCCTACTTATCTGAAATAGAGACTATTGGGCAAGCCTATGATGACATGCAGACTCAAAACCAGCATCTGTTGCAGCAGATTACTGAGAGGGATGATTACAATATTAAGCTTGTTTTGGAGGGTGTAAGGGCAAGGCAAAAGCAAGATTCTTTGGTCATGGAAAAGCAATCAATGCAGCAAGAGATCCAGCAAGCAAATGTTTCCCTGAATTTATATGAAACGAAAACAGCAAGAATTGAAGACCAGTTGAAGTCCTGTTCAGATCAGGTTCAAAGACTTACAGAGAATAAGATTCAAAGCTTCATCACATTGGAAAATACACAGAGAAGGCTGTTGGATGTTAGAAGATCATCTCAACAGGCTAGGGATGCAGTTGCAGAGGTGCAATCTAAAATTGGTAGTAATCGAGTGACTCGTATGGAATCACATGTAGAACTTGAGAAAGAAAGGTTTGCCAAGAAAAGAATAGAGGAGGAGCTGGAGGTTGCCAGGAGAAAGTTCTTGCACCTTAAAGCACAAAATGAGAGCTGCTCAGTGACTGGAAAGCTTCTGCAGGAACTGGGAGAGTACAGGGAAATTGTCAAGTGCAGTATCTGCAAAGACAGGACAAAAGAGGTGGTAATTACAAAATGCTACCACTTGTTCTGCAATTCATGTATCCAGAAAGTAGCTGGGAGTAGGCACCGCAAGTGTCCACAGTGTAGTACAAGCTTTGGGGCCAATGACGTTAAGCCTGTTTATTTGTAA 2643 0.4075 MGSMGESDRKRRHFSSLSPTAAPATAKKLPLLPISEDKKLDIAVLQFQNQKLMQKLETQKLEYTALEDKFSQLKERQQSYDSNLAVVKKNWEQLVNDLELCSESARESSSNLDSRYALVTSDGSPSTVQDVFLSRLLQTGATESSSTYNCANQVEEHREITSEKEKSILENIATTINNFWHVKGVLHTATLKKLPGDVSCRQKLSTDLEVEVKNLRLAFGELHLKHKSFASEYQVHRDLDAKNKAELRRLKGELESTVAELEESNHKLLTFKAERDAAKGAVLPVLNVGTACTASDKVREKQKDLQDMESALKELLEQGLSQLLELKSLHEERIRILQQLCDLQNTLKNLECITSSHAFKLVRDQIEKSKSEVLQYQALFEKLQVEKDNLVWREREWYMKSDLADLFQRSAVVSDSRAADLRTEIQKKIDERNVIENKLHEEAREPGRNQIIAEFKSLLSSFPEEMGSMQSQLSKYKESASDIHSLRADVQSISNVLERKVKECDALTVRCADQAAEIKRLLAVAQDLRQCEQDLKLILRMYRRESIDSRDVMEVRDAEYRAWANVQSLKSSLDEHQLELRVKTANEAEAKSQQRLAAAEAEIADMRQKLEASKKEMCKLSDVLRSKNEENEAYLSEIETIGQAYDDMQTQNQHLLQQITERDDYNIKLVLEGVRARQKQDSLVMEKQSMQQEIQQANVSLNLYETKTARIEDQLKSCSDQVQRLTENKIQSFITLENTQRRLLDVRRSSQQARDAVAEVQSKIGSNRVTRMESHVELEKERFAKKRIEEELEVARRKFLHLKAQNESCSVTGKLLQELGEYREIVKCSICKDRTKEVVITKCYHLFCNSCIQKVAGSRHRKCPQCSTSFGANDVKPVYL* 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1546 880 PANTHER RING FINGER PROTEIN-RELATED 1 880 IPR013956 GO:0004842|GO:0010390
Dod01g1546 880 Coils Coil 687 728 - -
Dod01g1546 880 Coils Coil 582 616 - -
Dod01g1546 880 MobiDBLite consensus disorder prediction 1 15 - -
Dod01g1546 880 Coils Coil 418 445 - -
Dod01g1546 880 ProSitePatterns Zinc finger RING-type signature. 843 852 IPR017907 -
Dod01g1546 880 Coils Coil 244 267 - -
Dod01g1546 880 Coils Coil 366 386 - -
Dod01g1546 880 Coils Coil 298 318 - -
Dod01g1546 880 CDD RING-HC_BRE1_like 826 867 - -
Dod01g1546 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 810 880 IPR013083 -
Dod01g1546 880 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1-LIKE 1 1 880 - -
Dod01g1546 880 Coils Coil 778 805 - -
Dod01g1546 880 MobiDBLite consensus disorder prediction 1 26 - -
Dod01g1546 880 SUPERFAMILY RING/U-box 820 879 - -
Dod01g1546 880 ProSiteProfiles Zinc finger RING-type profile. 828 867 IPR001841 -
Dod01g1546 880 SMART ring_2 828 866 IPR001841 -
Dod01g1546 880 Coils Coil 49 76 - -
Dod01g1546 880 Pfam Zinc finger, C3HC4 type (RING finger) 826 868 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1546 Dod-Chr1 42003893 42035229 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1546 817 879 C3H Transcription Factor Family AT2G42030 34.375 2.65e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1546 K10696 - gmx:100790337 1313.13