Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1541 ATGGGACTGGGCAAGACATTACAGGCTATCTCCTTTTTAAGCTATTTAAAAGTATACCAGTTATCGCCTGGGCCATTTTTGGTTATATGCCCTCTAAGTGTGACAGATGGTTGGGTGTCAGAGATGGTGAAATTTGCCCCAAAACTAGAAGTCTTTAAATATGTTGGTGATAAAGAATACAGACGCAATCTACGCATGAAAATACATGAACATGCAAAAGGGCAGCCATCAACACTTAACGTCTTGTTACCTTTTGACGTGCTATTAACAACATATGACGTAGCACTGGTGGATCAGGATTTTCTTTCTCAAATACCATGGCAGTATGCAATTATTGATGAAGCTCAGAGACTTAAAAACCCATCAAGTGTTTTATTTAATGTTCTCAAAGATCACTATATCATGCCAAGACGGTTGTTGATGACTGGCACACCTATTCAAAACAACCTCTCTGAATTGTGGGCATTGATGTATTTTTGTATGCCTTCTGTCTTTGGTACGCTGGATCAGTTCGGTTGTACATTCAAGGACATCAATGATCTTTCATCAGGGCATGATGCACCAAAGATAAAGGAGCAGCTTAAAATTCTGAAAAGATTATTGGGAGCCTTCATGCTTCGACGTACCAAATCAAAGCTTATCGAGTGCGGAAATCTAGTTTTGCCACCTCTCACCGAGACAACTGTGTTAGTACCCCTTTCCAGCCTTCAAAAACAAGTCTACATGTCAATATTGAGGAGGGAACTTCCTAGGCTTCTTGCACTATCTTCCGGAGCTGCAAATCATCAGTCACTGCAGAATATTGTGCTACAACTTAGAAAAGCATGCAGCCATCCTTATCTCTTTCCAGGTATTGAGCCCGAGCCGTTTGAAGAAGGTGAACATCTAGTTCAGGCCAGTGGTAAACTGCTCATTCTGGACCAGCTTCTTCAGAAGCTACATTGTTCTGGACACCGTGTTCTTCTTTTTGCTCAGATGACCCATACACTTGACATTTTGCAAGATTTTTTGGAGTTACGGAAGTATTCCTATGAGCGTCTTGATGGTTCAATTAGGGCTGAGGAGCGGTTTGCTGCAATCAGAAGTTTTAGCAGCTCATCAGCTAATATGGCCTTAAATTCTGAAGCTGACCAGCATGGAGCTTTTGTTTTCATGATCTCTACAAGAGCTGGGGGAGTTGGCTTGAATCTTGTGGCTGCTGATACTGTTATATTCTATGAGCAAGATTGGAATCCTCAGGTGGACAAGCAAGCTTTGCAGAGAGCACATAGAATTGGCCAGATGAACCATGTTTTGTGTATAAACCTTGTTATGGAACGTACAGTGGAGGAAGTAATTATGCAGAGGGCAGAGAGAAAATTGCAGCTGAGCCTCAATGTCATAGATGATAACATTCTGGAACTTGAAGATAACGAAACATCTGGCATTGGAAATAGTGATTTGAAATCCATCATATTTGGGTTAGATATGTTTGACCCCACTGAAATCAATGATGGAAAACATAGGGACATGGACTTGCAAGAAATTAAAGCTATGGCTGACAAGGTGATTGCTATGCGTGATGAACAAACATTTGACCAGGATAACAGTAAATTTGTGGTCAAGCCAAGAAACCTTTTGAAAGAAGATGGCTTTACTCAAAGAATTTCTTCTTCTCTATCTTATGATCTTGGTCTTGATGAAGCTTCATATCTGTCTTGGCTTAAAAAATTTGAGGAAGTGTCTAAATCAAGTGGTGACTCATTGGTGGAATTAAGGGGCAGAAGGAACTTAGATGAGAGGAGCTTAAAACTTGAGTCTGCAAAGAAGGCGGAGGAAAAGAAGCTGTCAAAGCGGAAAACTGTCGGATACCACTCATTGACTGTGAAAGACCCTGTCTGTCCACCAGATGGTGATATTATATCAGCTATTGGGTCTGTTCATTTTGTGTATGGAGATTGCACAGCCCCATCAAACATTTCTCCATCTAAACCTGCTATAATATTCAGGCACTCCAACATAATGTATAGTGAGGAAAATATAAGTGAGGGGAAAATTAGGGAATAG 2046 0.4076 MGLGKTLQAISFLSYLKVYQLSPGPFLVICPLSVTDGWVSEMVKFAPKLEVFKYVGDKEYRRNLRMKIHEHAKGQPSTLNVLLPFDVLLTTYDVALVDQDFLSQIPWQYAIIDEAQRLKNPSSVLFNVLKDHYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFGCTFKDINDLSSGHDAPKIKEQLKILKRLLGAFMLRRTKSKLIECGNLVLPPLTETTVLVPLSSLQKQVYMSILRRELPRLLALSSGAANHQSLQNIVLQLRKACSHPYLFPGIEPEPFEEGEHLVQASGKLLILDQLLQKLHCSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSIRAEERFAAIRSFSSSSANMALNSEADQHGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVMERTVEEVIMQRAERKLQLSLNVIDDNILELEDNETSGIGNSDLKSIIFGLDMFDPTEINDGKHRDMDLQEIKAMADKVIAMRDEQTFDQDNSKFVVKPRNLLKEDGFTQRISSSLSYDLGLDEASYLSWLKKFEEVSKSSGDSLVELRGRRNLDERSLKLESAKKAEEKKLSKRKTVGYHSLTVKDPVCPPDGDIISAIGSVHFVYGDCTAPSNISPSKPAIIFRHSNIMYSEENISEGKIRE* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1541 681 Coils Coil 679 681 - -
Dod01g1541 681 CDD SF2_C_SNF 294 437 - -
Dod01g1541 681 Coils Coil 588 608 - -
Dod01g1541 681 SMART helicmild6 331 426 IPR001650 -
Dod01g1541 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 208 IPR027417 -
Dod01g1541 681 Gene3D - 1 218 IPR038718 -
Dod01g1541 681 Gene3D - 219 532 IPR027417 -
Dod01g1541 681 SMART ultradead3 1 171 IPR014001 -
Dod01g1541 681 Pfam SNF2-related domain 1 281 IPR000330 GO:0005524|GO:0140658
Dod01g1541 681 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 163 IPR014001 -
Dod01g1541 681 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 305 476 IPR001650 -
Dod01g1541 681 Pfam Helicase conserved C-terminal domain 302 426 IPR001650 -
Dod01g1541 681 PANTHER HELICASE CHR10-RELATED 1 663 - -
Dod01g1541 681 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1 663 - -
Dod01g1541 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 504 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1541 Dod-Chr1 40391463 40411312 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1541 2 453 RAD5 or RAD16-like Gene Family AT3G16600 23.352 2.95e-22 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod01g1541 SNF2_N 2.2e-46 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1541 K20092 - gmx:100797182 992.26