Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1497 ATGGCCAAGCCTGGGGTGTTGGACTCTGATCCGGGGGTGCTGGTGAAGAAGACCATAGAGTTGAAGAAGGAGCTACAGAGGTTGGTGAAGTCTATTGTTGATGATGAGGATTGCAGCACTGAGACCATTGATCAAGCCAAGGAGGCTCTTTGTGTTCTCAAGGAGTTGAAGCTCAGAAGGAGTTCATCATTTTCTTTGAAGATGCCCAAGACTGTGACCTGCCCAGATGAATTCAAGTGTCCACTTTCCAAGGAATTGATGAGAGATCCTGTCATTGTGGCTTCTGGTCAGACATATGATAGACCTTTCATTCAAAAATGGCTGAATGCTGGAAATAGGACTTGCCCTCGAACCCATCAAGTCCTCTCACACACTGTGCTTACCTCAAATCACCTAATAAGGGAAATGATAGAACAATGGTGTAAAAATCAAGGGATTGAATTGTCCAACACTGTAAACTATATTAATGAGGAAGGTGTTACAAAAGCTGACCGTGACCATTTTCTTTGTTTACTTAAGAAAATGTCTTCAGCCCTATTTGATCAGAAAGCAGCTGCAAAAGAGCTTCGCTTGTTAACAAAGAAACACCCTTCCTTCCGGGTTCTTTTTTGTGATTCTGTAGATGCCATTCCCCAATTGCTCAAGCCGATTTGTGGGAGTGATTCTTTTACTGGTATTCACCCTGATCTCCAAGAAGATGTAATCACAACAATTCTCAATATCTCAATTCATGACAACAACAAGAAGCTAGTAGCTGAAACTCCTATGGTAATTCCACTCCTTACGAAGGCATTGAGATCTGGAACAATTGAAACAAGAAGCAATGCTGCAGCTGCCCTTTTCACTTTGTCAGCTTTAGACTCCAACAAAGACCTTATAGGAAAATCTGGCACCTTAAAGCCATTAGTTGACCTCTTAGAAGAAGGGCATTCCTTAGCCATGAAAGATGTTGCTTCAGCAATTTTTACTTTATGTGTCATTAATGAGAACAAGGCAAGGGCAGTGAAGGATGGCGCAGTGAGGGTGATTGTGTCGAAGATCAAGAGCCGGATTCATGTGGATGAATTGCTAGCTATCCTTGCATTGCTTTCAAGTCATCAGAGGGCTGTTCAGGACATGGGAGAGCTTGGGGCTGTTCCTTGCCTGCTAAGCATTATGAGAGAGAGCGCCTGTGAGCGCAACAAGGAGAACTGCATAGCAATCATTCAAACTGTTTGTTTGTATGATAGATCCAAGTTGAAGGAAATAAAGGAAGAGGAGAACACTTACAGAACAATCTCTGAGCTTGCACAGAACGGAACATCAAGGGCTAAGAGGAAAGCTAGTGGAATTCTAGAGAGACTGAACAGGGTTGTTAATATTACACACACTGCATAA 1377 0.4277 MAKPGVLDSDPGVLVKKTIELKKELQRLVKSIVDDEDCSTETIDQAKEALCVLKELKLRRSSSFSLKMPKTVTCPDEFKCPLSKELMRDPVIVASGQTYDRPFIQKWLNAGNRTCPRTHQVLSHTVLTSNHLIREMIEQWCKNQGIELSNTVNYINEEGVTKADRDHFLCLLKKMSSALFDQKAAAKELRLLTKKHPSFRVLFCDSVDAIPQLLKPICGSDSFTGIHPDLQEDVITTILNISIHDNNKKLVAETPMVIPLLTKALRSGTIETRSNAAAALFTLSALDSNKDLIGKSGTLKPLVDLLEEGHSLAMKDVASAIFTLCVINENKARAVKDGAVRVIVSKIKSRIHVDELLAILALLSSHQRAVQDMGELGAVPCLLSIMRESACERNKENCIAIIQTVCLYDRSKLKEIKEEENTYRTISELAQNGTSRAKRKASGILERLNRVVNITHTA* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1497 458 Pfam U-box domain 75 144 IPR003613 GO:0004842|GO:0016567
Dod01g1497 458 SUPERFAMILY ARM repeat 177 448 IPR016024 -
Dod01g1497 458 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 5 456 - -
Dod01g1497 458 Gene3D - 148 453 IPR011989 -
Dod01g1497 458 ProSiteProfiles U-box domain profile. 73 147 IPR003613 GO:0004842|GO:0016567
Dod01g1497 458 SUPERFAMILY RING/U-box 72 149 - -
Dod01g1497 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 147 IPR013083 -
Dod01g1497 458 SMART Ubox_2 77 140 IPR003613 GO:0004842|GO:0016567
Dod01g1497 458 PANTHER U BOX DOMAIN-CONTAINING 5 456 - -
Dod01g1497 458 CDD RING-Ubox_PUB 78 120 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1497 Dod-Chr1 36298003 36301037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1497 136 458 U-box Gene Family AT3G07360 61.515 1.04e-132 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1497 - - gmx:100777031 764.992