LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod01g1497	ATGGCCAAGCCTGGGGTGTTGGACTCTGATCCGGGGGTGCTGGTGAAGAAGACCATAGAGTTGAAGAAGGAGCTACAGAGGTTGGTGAAGTCTATTGTTGATGATGAGGATTGCAGCACTGAGACCATTGATCAAGCCAAGGAGGCTCTTTGTGTTCTCAAGGAGTTGAAGCTCAGAAGGAGTTCATCATTTTCTTTGAAGATGCCCAAGACTGTGACCTGCCCAGATGAATTCAAGTGTCCACTTTCCAAGGAATTGATGAGAGATCCTGTCATTGTGGCTTCTGGTCAGACATATGATAGACCTTTCATTCAAAAATGGCTGAATGCTGGAAATAGGACTTGCCCTCGAACCCATCAAGTCCTCTCACACACTGTGCTTACCTCAAATCACCTAATAAGGGAAATGATAGAACAATGGTGTAAAAATCAAGGGATTGAATTGTCCAACACTGTAAACTATATTAATGAGGAAGGTGTTACAAAAGCTGACCGTGACCATTTTCTTTGTTTACTTAAGAAAATGTCTTCAGCCCTATTTGATCAGAAAGCAGCTGCAAAAGAGCTTCGCTTGTTAACAAAGAAACACCCTTCCTTCCGGGTTCTTTTTTGTGATTCTGTAGATGCCATTCCCCAATTGCTCAAGCCGATTTGTGGGAGTGATTCTTTTACTGGTATTCACCCTGATCTCCAAGAAGATGTAATCACAACAATTCTCAATATCTCAATTCATGACAACAACAAGAAGCTAGTAGCTGAAACTCCTATGGTAATTCCACTCCTTACGAAGGCATTGAGATCTGGAACAATTGAAACAAGAAGCAATGCTGCAGCTGCCCTTTTCACTTTGTCAGCTTTAGACTCCAACAAAGACCTTATAGGAAAATCTGGCACCTTAAAGCCATTAGTTGACCTCTTAGAAGAAGGGCATTCCTTAGCCATGAAAGATGTTGCTTCAGCAATTTTTACTTTATGTGTCATTAATGAGAACAAGGCAAGGGCAGTGAAGGATGGCGCAGTGAGGGTGATTGTGTCGAAGATCAAGAGCCGGATTCATGTGGATGAATTGCTAGCTATCCTTGCATTGCTTTCAAGTCATCAGAGGGCTGTTCAGGACATGGGAGAGCTTGGGGCTGTTCCTTGCCTGCTAAGCATTATGAGAGAGAGCGCCTGTGAGCGCAACAAGGAGAACTGCATAGCAATCATTCAAACTGTTTGTTTGTATGATAGATCCAAGTTGAAGGAAATAAAGGAAGAGGAGAACACTTACAGAACAATCTCTGAGCTTGCACAGAACGGAACATCAAGGGCTAAGAGGAAAGCTAGTGGAATTCTAGAGAGACTGAACAGGGTTGTTAATATTACACACACTGCATAA	1377	0.4277	MAKPGVLDSDPGVLVKKTIELKKELQRLVKSIVDDEDCSTETIDQAKEALCVLKELKLRRSSSFSLKMPKTVTCPDEFKCPLSKELMRDPVIVASGQTYDRPFIQKWLNAGNRTCPRTHQVLSHTVLTSNHLIREMIEQWCKNQGIELSNTVNYINEEGVTKADRDHFLCLLKKMSSALFDQKAAAKELRLLTKKHPSFRVLFCDSVDAIPQLLKPICGSDSFTGIHPDLQEDVITTILNISIHDNNKKLVAETPMVIPLLTKALRSGTIETRSNAAAALFTLSALDSNKDLIGKSGTLKPLVDLLEEGHSLAMKDVASAIFTLCVINENKARAVKDGAVRVIVSKIKSRIHVDELLAILALLSSHQRAVQDMGELGAVPCLLSIMRESACERNKENCIAIIQTVCLYDRSKLKEIKEEENTYRTISELAQNGTSRAKRKASGILERLNRVVNITHTA*	459

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod01g1497	458	Pfam	U-box domain	75	144	IPR003613	GO:0004842\|GO:0016567
	Dod01g1497	458	SUPERFAMILY	ARM repeat	177	448	IPR016024	-
	Dod01g1497	458	PANTHER	U-BOX DOMAIN-CONTAINING PROTEIN 9	5	456	-	-
	Dod01g1497	458	Gene3D	-	148	453	IPR011989	-
	Dod01g1497	458	ProSiteProfiles	U-box domain profile.	73	147	IPR003613	GO:0004842\|GO:0016567
	Dod01g1497	458	SUPERFAMILY	RING/U-box	72	149	-	-
	Dod01g1497	458	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	71	147	IPR013083	-
	Dod01g1497	458	SMART	Ubox_2	77	140	IPR003613	GO:0004842\|GO:0016567
	Dod01g1497	458	PANTHER	U BOX DOMAIN-CONTAINING	5	456	-	-
	Dod01g1497	458	CDD	RING-Ubox_PUB	78	120	IPR045210	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod01g1497	Dod-Chr1	36298003	36301037	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod01g1497	136	458	U-box Gene Family	AT3G07360	61.515	1.04e-132	384

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod01g1497	-		-	gmx:100777031	764.992

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