Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1476 ATGGCGGATGTCGCCGTGATGAGAGAGATTGAGGCCACCGCCTCCCGCCTCGGAGTGGACCTTTCCGCCCTTGATCTCGACTCTATTCGCCTCCCTTCCGATGACGACTACGGCATCAAAAGTGATGATGAAGATGTTTACCAAGAGGAGAATCTGGAGTTTGACTCTGGGTTTGGAAACATTATAGTGGTGGATAATCTCCCTGTTGTTCCGAAGGAGAAGTTTGAGAAGCTTGAAGGTGTCATTCGAAAAATCTACAGCCAGATTGGCCTCATCAAGGACGATGGCCTCTGGATGCCCGTTGATCCACAAACTGAAAAGACTTTGGGTTATTGCTTTATTGAGTATAATACACCTCAGGAAGCTGAGCTTGCTAAAGAGAAGACACACGGATACAAGTTGGATCGTTCACACATCTTTTCTGTGAATATGTTTGATGACTTTGATAGGTTCATGAGAGTTCCAGATGAGTGGGCTCCACCTGAAACAACACCATACACACCTGGGGAAAATCTTCAACATTGGCTGACTGATGCAAAAGCCCGTGACCAGTTTGTGATTCGTGCTGGCTCTGATACTGAGGTGTTGTGGAATGATGCAAGACATTTGAAGCCTGATCCAGTTTATAAGCGTGCATTTTGGACTGAAAGTTTTGTGCAATGGTCCCCAATGGGCACATACCTGGCAACCATACATAGGCAAGGAGCAGCGGTTTGGGGAGGAGCCTCAACATTCAATCGCCTCATGCGATATGCTCATCCGCAGGTTAAACTTATTGATTTTTCACCTGGTGAGAAGTATTTGGTAACCTATAGTAGCCATGAACCGAGCAATCCTCGAGATGCAAATAGGGTTGTGATAAATATATTCGATGTGAGAACTGGAAAAGTGATGAGAGATTTTAAGGGAAGTGCTGATGATTTTGCTATTGGAGGTGCTGGCAGTGTCACAGGAGTGTCATGGCCCATTTTCAGATGGGGTGGAGGAAAGGATGACAAGTACTTTGCTAGACTAGGGAAAAATATGATCTCTGTCTATGAGACAAGAGACATTTTCTCTTGTTGA 1065 0.4535 MADVAVMREIEATASRLGVDLSALDLDSIRLPSDDDYGIKSDDEDVYQEENLEFDSGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGLIKDDGLWMPVDPQTEKTLGYCFIEYNTPQEAELAKEKTHGYKLDRSHIFSVNMFDDFDRFMRVPDEWAPPETTPYTPGENLQHWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRAFWTESFVQWSPMGTYLATIHRQGAAVWGGASTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFAIGGAGSVTGVSWPIFRWGGGKDDKYFARLGKNMISVYETRDIFSC* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1476 354 SUPERFAMILY DPP6 N-terminal domain-like 218 349 - -
Dod01g1476 354 CDD RRM_eIF3B 59 143 IPR034363 -
Dod01g1476 354 SUPERFAMILY RNA-binding domain, RBD 57 144 IPR035979 GO:0003676
Dod01g1476 354 Gene3D - 55 154 IPR012677 -
Dod01g1476 354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 137 IPR000504 GO:0003723
Dod01g1476 354 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 8 349 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Dod01g1476 354 Gene3D - 179 351 IPR015943 GO:0005515
Dod01g1476 354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Dod01g1476 354 SMART rrm1_1 61 143 IPR000504 GO:0003723
Dod01g1476 354 PANTHER BNACNNG51870D PROTEIN 8 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1476 Dod-Chr1 35221186 35224557 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1476 9 348 Eukaryotic Initiation Factors Gene Family AT5G27640 72.353 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1476 K03253 - gmx:100779711 663.299