Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1454 ATGCATTCCATAACAGCTTACGGTAAAGTTGATGAAGTTGAGCATGTCATGCTGGAAGCTCGCCGGAAAACCCGAAAGCGAATCGCGATCATAAGCCTGTCCACAATAGTTCTTGTTGGTGTTGTGTGTGCTGCAGTGTTCGGAACCGTTGCACGCAACAGTGGTCGTGACAACACAAATAACGATGACAACGTTAACGCTCAATCTCTTTCCAATTCGCTGAAGGCTATTTGCGATGTGACATTGTACAAAGATGAGTGTTATGGCAGCCTTGGTCCTCTTGTCAAGTCAGGCCAGCTTCAACCCGAGGAGCTGTTCGTTCTGTCAGTCAAAGTGGCCTTAACTGAGGTTTCAAGAGCTGTTCAGCATTTCTCTGAGCAGGGAGCTTTCAAAGGCTTGAACGATGACAGGGCCAAGGAAGCTTTGAAAAATTGCCAGGATCTTTTGGGCCTTGCAGTTGATCATCTGAATAGCTCGTTGACTTTGTCTGCTGGGGAAAGGTCTTCCTTGCTCGATGTTTTGGAGGATCTTACAACTTGGTTGAGTGCTGCAGGTACTCACCAGCAGACATGCATTGATGGCTTTGAGGAGGAAAATGAAGCATTGAAGACTAGTATTCTAAGCAATCTAAAAAATTCCACGGGGTTCACCAGTAACAGTCTTGCCATCATTACTTGGATCAACAAGGCAGCAAGAACAGTGAACTTGAGGCGCTTGTTAATTTTGCCGAATAAAGAACCAAAGTGGCTTCCTTCTAATGATCGAAAGCTGCTTCAAAATGATGATTTGAAGAAGAAAGCCAACATTGTTGTGGCGAAAGATGGGAGTGGGAAATACAAAACAATTTCTGCTGCACTTAAACATGTCCCAAAAAAAAGTGACAAGAGGACGGTGATCTATGTTAAGAAAGGGATCTACTATGAAAATGTGAGGGTGGAGAAGACCAAATGGAATGTCATGATCATTGGTGATGGTATGAATGCCACTATTGTGTCTGGCAGCCTTAACTTTGTGGATGGCACCCCAACATTTTCAACTGCAACTTTTGCTGTATTTGGGAAGAATTTTATTGCCAGGGACATGGGATTTCGCAACACAGCTGGTCCACAGAAGCACCAGGCAGTGGCATTAATGACAACTGCTGATCAAGCAGTTTACTATAGGTGTCAAATTGATGCATTTCAGGACACTCTCTATGCTCAAGCCAATCGCCAATTCTACAGGGAATGCAACATCTATGGGACAGTTGACTTCATTTTTGGCAACGCTGCAGTTGTCATCCAAAACTGTAAAATTTTGCCAAAGTTGCCTATGCAGGGCCAAAAGAACACAATAACAGCACAGGGCAAAACTGACCCTAATATGAACACGGGAATTTCAATCCAAAATTGCAGCATTTCACCCTCTGGAAACTTAGGTTCTGTCCAAACATACCTCGGCAGACCTTGGAAGAATTACTCAACCACAATATTTATGCAATCCACTATGGGAAGTTTCATTAACCCAAATGGGTGGTTACCATGGGTAGGGAATTCAGCACCGGATACCATATTTTATGCAGAAATTCAGAATGTTGGACCGGGTTCTTCAACGAAAAAAAGGGTGAAATGGAAGGGTGTGAGAACCATTAGCAATAAACAAGCTAGCTTATTTACGGTGAAGTCCTTTCTTTCAGGGGACAGATGGATTCCAGCTTCGGGTGCCCCCTTTAAATCTTCTCTTTGA 1725 0.4365 MHSITAYGKVDEVEHVMLEARRKTRKRIAIISLSTIVLVGVVCAAVFGTVARNSGRDNTNNDDNVNAQSLSNSLKAICDVTLYKDECYGSLGPLVKSGQLQPEELFVLSVKVALTEVSRAVQHFSEQGAFKGLNDDRAKEALKNCQDLLGLAVDHLNSSLTLSAGERSSLLDVLEDLTTWLSAAGTHQQTCIDGFEEENEALKTSILSNLKNSTGFTSNSLAIITWINKAARTVNLRRLLILPNKEPKWLPSNDRKLLQNDDLKKKANIVVAKDGSGKYKTISAALKHVPKKSDKRTVIYVKKGIYYENVRVEKTKWNVMIIGDGMNATIVSGSLNFVDGTPTFSTATFAVFGKNFIARDMGFRNTAGPQKHQAVALMTTADQAVYYRCQIDAFQDTLYAQANRQFYRECNIYGTVDFIFGNAAVVIQNCKILPKLPMQGQKNTITAQGKTDPNMNTGISIQNCSISPSGNLGSVQTYLGRPWKNYSTTIFMQSTMGSFINPNGWLPWVGNSAPDTIFYAEIQNVGPGSSTKKRVKWKGVRTISNKQASLFTVKSFLSGDRWIPASGAPFKSSL* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1454 574 Gene3D Invertase/pectin methylesterase inhibitor family protein 71 228 IPR035513 -
Dod01g1454 574 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 72 227 IPR035513 -
Dod01g1454 574 Gene3D - 263 574 IPR012334 -
Dod01g1454 574 Pfam Pectinesterase 268 560 IPR000070 GO:0030599|GO:0042545
Dod01g1454 574 CDD PMEI-like_3 76 229 - -
Dod01g1454 574 Pfam Plant invertase/pectin methylesterase inhibitor 73 223 IPR006501 GO:0004857
Dod01g1454 574 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Dod01g1454 574 SMART PMEI_2 69 223 IPR006501 GO:0004857
Dod01g1454 574 PANTHER PECTINESTERASE 5 572 - -
Dod01g1454 574 TIGRFAM PME_inhib: pectinesterase inhibitor domain 70 227 IPR006501 GO:0004857
Dod01g1454 574 SUPERFAMILY Pectin lyase-like 266 570 IPR011050 -
Dod01g1454 574 PANTHER PECTINESTERASE 5 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1454 Dod-Chr1 33865579 33869649 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1454 5 574 Carbohydrate Esterase AT3G10710 56.918 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1454 - - gmx:100816529 916.376