LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod01g1454	ATGCATTCCATAACAGCTTACGGTAAAGTTGATGAAGTTGAGCATGTCATGCTGGAAGCTCGCCGGAAAACCCGAAAGCGAATCGCGATCATAAGCCTGTCCACAATAGTTCTTGTTGGTGTTGTGTGTGCTGCAGTGTTCGGAACCGTTGCACGCAACAGTGGTCGTGACAACACAAATAACGATGACAACGTTAACGCTCAATCTCTTTCCAATTCGCTGAAGGCTATTTGCGATGTGACATTGTACAAAGATGAGTGTTATGGCAGCCTTGGTCCTCTTGTCAAGTCAGGCCAGCTTCAACCCGAGGAGCTGTTCGTTCTGTCAGTCAAAGTGGCCTTAACTGAGGTTTCAAGAGCTGTTCAGCATTTCTCTGAGCAGGGAGCTTTCAAAGGCTTGAACGATGACAGGGCCAAGGAAGCTTTGAAAAATTGCCAGGATCTTTTGGGCCTTGCAGTTGATCATCTGAATAGCTCGTTGACTTTGTCTGCTGGGGAAAGGTCTTCCTTGCTCGATGTTTTGGAGGATCTTACAACTTGGTTGAGTGCTGCAGGTACTCACCAGCAGACATGCATTGATGGCTTTGAGGAGGAAAATGAAGCATTGAAGACTAGTATTCTAAGCAATCTAAAAAATTCCACGGGGTTCACCAGTAACAGTCTTGCCATCATTACTTGGATCAACAAGGCAGCAAGAACAGTGAACTTGAGGCGCTTGTTAATTTTGCCGAATAAAGAACCAAAGTGGCTTCCTTCTAATGATCGAAAGCTGCTTCAAAATGATGATTTGAAGAAGAAAGCCAACATTGTTGTGGCGAAAGATGGGAGTGGGAAATACAAAACAATTTCTGCTGCACTTAAACATGTCCCAAAAAAAAGTGACAAGAGGACGGTGATCTATGTTAAGAAAGGGATCTACTATGAAAATGTGAGGGTGGAGAAGACCAAATGGAATGTCATGATCATTGGTGATGGTATGAATGCCACTATTGTGTCTGGCAGCCTTAACTTTGTGGATGGCACCCCAACATTTTCAACTGCAACTTTTGCTGTATTTGGGAAGAATTTTATTGCCAGGGACATGGGATTTCGCAACACAGCTGGTCCACAGAAGCACCAGGCAGTGGCATTAATGACAACTGCTGATCAAGCAGTTTACTATAGGTGTCAAATTGATGCATTTCAGGACACTCTCTATGCTCAAGCCAATCGCCAATTCTACAGGGAATGCAACATCTATGGGACAGTTGACTTCATTTTTGGCAACGCTGCAGTTGTCATCCAAAACTGTAAAATTTTGCCAAAGTTGCCTATGCAGGGCCAAAAGAACACAATAACAGCACAGGGCAAAACTGACCCTAATATGAACACGGGAATTTCAATCCAAAATTGCAGCATTTCACCCTCTGGAAACTTAGGTTCTGTCCAAACATACCTCGGCAGACCTTGGAAGAATTACTCAACCACAATATTTATGCAATCCACTATGGGAAGTTTCATTAACCCAAATGGGTGGTTACCATGGGTAGGGAATTCAGCACCGGATACCATATTTTATGCAGAAATTCAGAATGTTGGACCGGGTTCTTCAACGAAAAAAAGGGTGAAATGGAAGGGTGTGAGAACCATTAGCAATAAACAAGCTAGCTTATTTACGGTGAAGTCCTTTCTTTCAGGGGACAGATGGATTCCAGCTTCGGGTGCCCCCTTTAAATCTTCTCTTTGA	1725	0.4365	MHSITAYGKVDEVEHVMLEARRKTRKRIAIISLSTIVLVGVVCAAVFGTVARNSGRDNTNNDDNVNAQSLSNSLKAICDVTLYKDECYGSLGPLVKSGQLQPEELFVLSVKVALTEVSRAVQHFSEQGAFKGLNDDRAKEALKNCQDLLGLAVDHLNSSLTLSAGERSSLLDVLEDLTTWLSAAGTHQQTCIDGFEEENEALKTSILSNLKNSTGFTSNSLAIITWINKAARTVNLRRLLILPNKEPKWLPSNDRKLLQNDDLKKKANIVVAKDGSGKYKTISAALKHVPKKSDKRTVIYVKKGIYYENVRVEKTKWNVMIIGDGMNATIVSGSLNFVDGTPTFSTATFAVFGKNFIARDMGFRNTAGPQKHQAVALMTTADQAVYYRCQIDAFQDTLYAQANRQFYRECNIYGTVDFIFGNAAVVIQNCKILPKLPMQGQKNTITAQGKTDPNMNTGISIQNCSISPSGNLGSVQTYLGRPWKNYSTTIFMQSTMGSFINPNGWLPWVGNSAPDTIFYAEIQNVGPGSSTKKRVKWKGVRTISNKQASLFTVKSFLSGDRWIPASGAPFKSSL*	575

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod01g1454	574	Gene3D	Invertase/pectin methylesterase inhibitor family protein	71	228	IPR035513	-
	Dod01g1454	574	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	72	227	IPR035513	-
	Dod01g1454	574	Gene3D	-	263	574	IPR012334	-
	Dod01g1454	574	Pfam	Pectinesterase	268	560	IPR000070	GO:0030599\|GO:0042545
	Dod01g1454	574	CDD	PMEI-like_3	76	229	-	-
	Dod01g1454	574	Pfam	Plant invertase/pectin methylesterase inhibitor	73	223	IPR006501	GO:0004857
	Dod01g1454	574	ProSitePatterns	Pectinesterase signature 2.	412	421	IPR033131	-
	Dod01g1454	574	SMART	PMEI_2	69	223	IPR006501	GO:0004857
	Dod01g1454	574	PANTHER	PECTINESTERASE	5	572	-	-
	Dod01g1454	574	TIGRFAM	PME_inhib: pectinesterase inhibitor domain	70	227	IPR006501	GO:0004857

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod01g1454	Dod-Chr1	33865579	33869649	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod01g1454	5	574	Carbohydrate Esterase	AT3G10710	56.918	0.0	677

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod01g1454	-		-	gmx:100816529	916.376

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