Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1427 ATGTCAGCTAGGGATAGCGGGCGAGTATCGCTAGCCGGCTTGACCCTTGAAGACGTCTTAGCCAAACAGAAGAGATCTAACACCGCACAGGCACAGCAAATCCAACAATTAGTACCCTCGAATAGGCAACCGACCCTCATAGACCTCATCAAAGAAGACGAGAGCAACAAGAAGGACCGCAGGTCTTGGAAAGCTTTTAAGGACAAGCTTCGGCTCAAGCGTGCCGGCTCTGCTTGGATATCGACGATTCGCATTCCCGCTTCGGATATCCCTATCCCCCACCCAAACAGCAGAACATTCACCCAGCTCGGTCGTCGCATCTCGGTTCGACTCACTCACTCCATCTCGGACGCGCCAACTTTCTACATGGCCAACCAACACCACGACTTCGACCCCACCACCGACGTCAGCGGCTCTCCGCCTCCAGCTCCGGCGGACAGGGCCCAGTTCACTCGGCGGAGCTCCACTCGCTACGGCACCACTGCCGAGGCTCCCTTTACCGCTGGCGATCCAACCGAACCAGCCCCCGCCGGCAGCGCCCTCCGGCCTCAGCTTTCGCGGCGGAACTCCACCACCATACCAACGGCGTCGGAGCCGTACCGGCGGGGTCGCGTGGTGACCTTCCGGGACAGCTTCGACGACGACGAGCCAGAGGACGAGGACGGCAGGCGGATGGAGACGGGGAGGGCGCTGTCAGCGAGGGAGGCCGTGGCGGCGCAGGAAGCGGCGGAGGCGGCCGCTGCTGCGGAGAGAGAGGCGGAGGCGGAGGTGCCCGGGCGGCCGGTGACGATGTCGCTGATGGATCTGCTGGAAGAGACTGACAGGGAGATGGGGCTTGAAAGGTCTCGGTATATATTAAGTGATGACGAGGATTTTGATGACGAGGAAGAGGAGGAAGGGGAAGTTGATGGGCACGGTAAGGGTGACATGGAGTACACTTGCCCTGTTTGCCTGGTGAGGCATAAGGCTACTGCTATCAACTTTTGTGGTCACTCTTACTGTAGGATGTGCTCCAGGGAGCTTTCGGTCAGCAAGGGGAACTGCCCTCTCTGCAACAATTTCATCTTGGAGATTCTTGAAATTTTCTGA 1089 0.5904 MSARDSGRVSLAGLTLEDVLAKQKRSNTAQAQQIQQLVPSNRQPTLIDLIKEDESNKKDRRSWKAFKDKLRLKRAGSAWISTIRIPASDIPIPHPNSRTFTQLGRRISVRLTHSISDAPTFYMANQHHDFDPTTDVSGSPPPAPADRAQFTRRSSTRYGTTAEAPFTAGDPTEPAPAGSALRPQLSRRNSTTIPTASEPYRRGRVVTFRDSFDDDEPEDEDGRRMETGRALSAREAVAAQEAAEAAAAAEREAEAEVPGRPVTMSLMDLLEETDREMGLERSRYILSDDEDFDDEEEEEGEVDGHGKGDMEYTCPVCLVRHKATAINFCGHSYCRMCSRELSVSKGNCPLCNNFILEILEIF* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1427 362 Coils Coil 236 256 - -
Dod01g1427 362 PANTHER OS01G0917900 PROTEIN 5 362 - -
Dod01g1427 362 PANTHER OS01G0917900 PROTEIN 5 362 - -
Dod01g1427 362 Pfam Zinc finger, C3HC4 type (RING finger) 312 355 - -
Dod01g1427 362 SUPERFAMILY RING/U-box 313 358 - -
Dod01g1427 362 SMART ring_2 314 351 IPR001841 -
Dod01g1427 362 MobiDBLite consensus disorder prediction 131 228 - -
Dod01g1427 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
Dod01g1427 362 MobiDBLite consensus disorder prediction 183 197 - -
Dod01g1427 362 ProSiteProfiles Zinc finger RING-type profile. 314 352 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1427 Dod-Chr1 32561100 32563436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1427 1 362 C3H Transcription Factor Family AT3G07120 36.198 1.17e-53 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1427 - - gmx:100795449 358.221