Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1393 ATGGAGAACAAGGCATTCAAAGCTCAAGAATTCGGGGATGAAGAAACTGAAGAAGTCCCTGATTCCTTTGTTTGTTCCATTTGTCGGGATCTATTATACAAGCCCATTGTGCTATCTTGTGGTCACATATGCTGTTTCTGGTGTGTCCATAAATCAATGAATTATCTGCATGAGTCTCAATGTCCAATTTGTAGGCATCAGTACTACCACTTTCCAACAATCTGTCAATTGCTTCACTTTTTACTCCTTAAGATCTATCCTGTTGTTTACAAGAGAAGGGAAAATCAAATTTTTGAGGAAGAAAAGGAAATGGGCTGCTACTCCCCTCAATTTGATCTTGAAACAAAGGGTTCACAAGGTAAATTTGGTCATTCTGGTAGCTCATCTTCCTGCTCTAATATAAATCTGTCATCAAATTCATGCAATGTGGGAACTTCTGAATGCATGAAGCAATCAGAGTCCACTGCCCACGAAGGAGATGAAGGCCCCATCTATTGCAATCACTCTTCTGATGGAGTACCTGAAATTATTGGGGCTCAAGTTGAAGGAAAAAAATTGCCTCAGAATGAGCATCATCTACAACAGAAAATATCAGTTGCAGATGTGATGTGTACAATGTGCAAGCAACTGCTCTTTCGTCCTGTTGTACTTAACTGTGGTCATGTACACTGTCAAAATTGTGTCAGCAACTTAGCTGATGAGATGCTAAGATGTCAAGATTGTCAAAGTCCACATCCAAGAGGATTTCCAAAAGTTTGTCTAGAACTTGATCACTTTTTGGAGGAACAATTTGCGGAAGAATATGCACTGCGAAAAGATGCTGTACAGCTGAGGCAAATCAAAGTCAATCCTGAGACACCTTCTTCTTGTTCGTTGGATAATGTTAACAAAGGAGAAAACATTGCCTGGTGGCTTGATCCTACCTCAAAAGTTCACCCTGGAGTCGGTTGTGATTTTTGTGGGATGTTTCCAATAATTGGAGATAGATATAAGTGCATTGACTGTAAGGAGGAGATCGGTTTTGACCTCTGTGGCGATTGCTATAATACCCGCTCCAAGCGTCCAGGCCGATTTAATCAACAGCACACCACAGAGCATAGGTTCGAGCTTATACAAGCCAGTCTTTTACAGAACATAATGTTGAGCCTGGTCCCGGTGCAGTTAGCGGACGGTTCTATTGATGAGGAGTCTCTAGGAAATTTAGCATTTGCCTCCCAAGACCCCGCCTTGTTTGATGACACAGAAGATAACCAGAATGATTCTGAAGCTGCCAATTGA 1278 0.4147 MENKAFKAQEFGDEETEEVPDSFVCSICRDLLYKPIVLSCGHICCFWCVHKSMNYLHESQCPICRHQYYHFPTICQLLHFLLLKIYPVVYKRRENQIFEEEKEMGCYSPQFDLETKGSQGKFGHSGSSSSCSNINLSSNSCNVGTSECMKQSESTAHEGDEGPIYCNHSSDGVPEIIGAQVEGKKLPQNEHHLQQKISVADVMCTMCKQLLFRPVVLNCGHVHCQNCVSNLADEMLRCQDCQSPHPRGFPKVCLELDHFLEEQFAEEYALRKDAVQLRQIKVNPETPSSCSLDNVNKGENIAWWLDPTSKVHPGVGCDFCGMFPIIGDRYKCIDCKEEIGFDLCGDCYNTRSKRPGRFNQQHTTEHRFELIQASLLQNIMLSLVPVQLADGSIDEESLGNLAFASQDPALFDDTEDNQNDSEAAN* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1393 425 CDD ZZ_PCMF_like 315 371 - -
Dod01g1393 425 SMART ring_2 204 241 IPR001841 -
Dod01g1393 425 SMART ring_2 25 64 IPR001841 -
Dod01g1393 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 269 IPR013083 -
Dod01g1393 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 89 IPR013083 -
Dod01g1393 425 Pfam Zinc finger, C3HC4 type (RING finger) 24 67 - -
Dod01g1393 425 PANTHER UNCHARACTERIZED 7 420 - -
Dod01g1393 425 CDD RING-HC 25 64 - -
Dod01g1393 425 Pfam Zinc finger, ZZ type 312 353 IPR000433 GO:0008270
Dod01g1393 425 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKE 7 420 - -
Dod01g1393 425 SMART zz_5 311 357 IPR000433 GO:0008270
Dod01g1393 425 SUPERFAMILY RING/U-box 302 371 - -
Dod01g1393 425 ProSitePatterns Zinc finger ZZ-type signature. 317 347 IPR000433 GO:0008270
Dod01g1393 425 SUPERFAMILY RING/U-box 17 74 - -
Dod01g1393 425 ProSiteProfiles Zinc finger RING-type profile. 204 242 IPR001841 -
Dod01g1393 425 ProSiteProfiles Zinc finger RING-type profile. 25 65 IPR001841 -
Dod01g1393 425 SUPERFAMILY RING/U-box 199 245 - -
Dod01g1393 425 ProSiteProfiles Zinc finger ZZ-type profile. 312 376 IPR000433 GO:0008270
Dod01g1393 425 Gene3D - 306 371 IPR043145 -
Dod01g1393 425 Pfam RING-type zinc-finger 204 231 IPR027370 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1393 Dod-Chr1 31113797 31135184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1393 15 65 C3H Transcription Factor Family AT1G74990 38.462 1.21e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1393 - - gmx:100782681 622.083