Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1391 ATGAAGTCCGCTGCCAATATGGCTCAGGGACAGAGTAATTGGGAAGCTGATAAAATGCTTGATGTCTACATTCACGATTATTTTGTGAAAAGAAAATTACATACCACCGCAAAAGCTTTTATGACAGAAGGCAAAGTTTCCAACGATCCAGTAGCAATTGATGCACCTGGAGGATTTCTTTACGAGTGGTGGTCTGTTTTTTGGGATGTCTTCATCTCAAGGACAAATGAGAAACATTCTGAGGCTGCTGCAGCTTACATTGAGACCCAGCAACTAAAGGCCAGAGAACAACAACTTCAAATGCAGCAATTGCAACTAATGCAGCAGCGCAGCGCACAGTTACAGCGACGAGATCCTAATCATCCTGCGCTTAGTGGTTCCTTAAATGCCATGAACTCTGAAGGAATGTTGGGGCAACCACCAGCAAATGTGTTGGCCATGAAAATGTATGAAGAACGCATGAAACACCCTCATTCAATGGAGTCAGAGGCATCTCCAACTCTTATCGATGCCAACAGGATGGCACTTCTTAAATCAGCAACAAGTCATCAAGGTCAATTGGTTCATAGTAATTCAGGAAATATGTCGACTGCATTGCAGCAACTTCAGGCCCGGCCTCCTTTGATCACTGACATCAAAGGAGAAGCTAACTTAGGTGCCACTCCGAAGAGTTTGCCTATGGATAATTCAACTTATAGACAAGCGATTTTACAATCGAAATCTGGACTAGGCAGTGCAGGATTAAATCAAGGAGTAACAAGTCTTCCACTAAAGGGCTGGCCGCTAACTGGAATTGATCAACTAAGACCTGGTTTGGGTGTACAAATTCAGAAGCCTAATATGACAACACAAAGCCAATTTCTTTTGGCATCACAACAGCAGCAAGTATTGGCACAGGCTCAAGCACAAAATAACCTTGGAAATTCTAATAGTCATGGTGATATGGACCCACGTAGACTTTCTGCTCTTTCTCGAGGTGGCTTAAGTGCAAAAGATGGTCCGTCTACTAGGAATGATGGATCTGTTTGCTCCCAAGTGCAGTCAGGTTCACCCAAGATGAATATGGCCCAGGCTCAACATTCACTATCTCAACAGCAAGAGCATTTGCAGCAGCAACAACTGCAGCAGAATAACCGAAAAAGAAAACAGCATTCTTCTTCTGGAGCTGCCAATAGCACTGGTACTGGAAACACAGTAGGTCCTTCGCCTAATTCACCGCCATCAACTCACACACCTGGTGATGGAATAAATACAGCCAGCAGCATGCAGCATAATAGTGTGCAAAAGAACACGATGATGTATGGTACAGAGGGAACAGGAGGCCTTGCATCTTCAAATTTGCTTGATGACATGGACCGATTTGGAGATGTTGGTGCTTTAGAGGATAATGTGGAATCCTTTCTATCAAATGATGCAGGAGATGGTGGTAATATCTATGGAACTATAAAACAAAGTCCAGCTGAGCAACAAAAAGAATCTTCAAAAGGTTTCACCTTTGCTGAATTTGGTTGCATAAGAACAAGGAACAGCAAAGTTACATGCTGTCACTTTTCTTCAGATGGAAAAATGCTTGCTAGTGCTGGACATGACAACAAGGTCGTCCTCTGGAACATGGACACTTTACAGACAGAGAGCACTCCTGAAGAACACAAGTCAGTTATTTCAGATGTTCGTTTTAGACCAAATTCATCTGAGTTAGCGACGGCCTCAATTGATAAATCTGTGCGACTATGGGATGCAGCCAATCCGAGCTATTGTGTGAAAGAATATAGTGGGCACAGTTCAGCTATTATGTCTCTTGATTTCCATCCTAAGAAAACTGATCTTTTCTGCTTCTGTGATAGTGAAAATGAAATTCGGTATTGGAATATTACTTCATCCTCCTGCACCCATGTATCTAAGGGTGGTAATATACAAGTGAGATTTCAGCCTAGAGTGGGACAGGTACTGGCTGCAGCTTCTGATAAAGTAGTGTCAATTTTGGATGTTGAAACTGACAGACAAATTTACTCACTCCAGGGACATCCTGAGGCCGTGAACTATATTTGCTGGGATGTGAATGGAGATTTGTTAGCAACTGTGAGTCAAAATTTGGTGAAGATTTGGACACTGGCTTCAGGAGAATGCATTCAGGAGCTCAGCTCCAATGGGAACCAATTCTATTCCTGTGTTTTTCATCCAAGTTATTCAACTTTATTGGTGATCGGAGAGATTTCGTCCTTGGAGCTGTGGAACATGGCTGAGAACAGAAGCATGACGATATCTGCACACGAGAATATAATTTCTGCTTTGGCTCAGTCTCCTGTCACTGGAATGGTTGCCTCAGCAAGTCATGACTGCTCCGTGAAGTTGTGGAAATAA 2361 0.4295 MKSAANMAQGQSNWEADKMLDVYIHDYFVKRKLHTTAKAFMTEGKVSNDPVAIDAPGGFLYEWWSVFWDVFISRTNEKHSEAAAAYIETQQLKAREQQLQMQQLQLMQQRSAQLQRRDPNHPALSGSLNAMNSEGMLGQPPANVLAMKMYEERMKHPHSMESEASPTLIDANRMALLKSATSHQGQLVHSNSGNMSTALQQLQARPPLITDIKGEANLGATPKSLPMDNSTYRQAILQSKSGLGSAGLNQGVTSLPLKGWPLTGIDQLRPGLGVQIQKPNMTTQSQFLLASQQQQVLAQAQAQNNLGNSNSHGDMDPRRLSALSRGGLSAKDGPSTRNDGSVCSQVQSGSPKMNMAQAQHSLSQQQEHLQQQQLQQNNRKRKQHSSSGAANSTGTGNTVGPSPNSPPSTHTPGDGINTASSMQHNSVQKNTMMYGTEGTGGLASSNLLDDMDRFGDVGALEDNVESFLSNDAGDGGNIYGTIKQSPAEQQKESSKGFTFAEFGCIRTRNSKVTCCHFSSDGKMLASAGHDNKVVLWNMDTLQTESTPEEHKSVISDVRFRPNSSELATASIDKSVRLWDAANPSYCVKEYSGHSSAIMSLDFHPKKTDLFCFCDSENEIRYWNITSSSCTHVSKGGNIQVRFQPRVGQVLAAASDKVVSILDVETDRQIYSLQGHPEAVNYICWDVNGDLLATVSQNLVKIWTLASGECIQELSSNGNQFYSCVFHPSYSTLLVIGEISSLELWNMAENRSMTISAHENIISALAQSPVTGMVASASHDCSVKLWK* 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1391 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 505 546 IPR001680 GO:0005515
Dod01g1391 786 Gene3D - 638 786 IPR015943 GO:0005515
Dod01g1391 786 Coils Coil 355 375 - -
Dod01g1391 786 Pfam LisH 18 44 IPR006594 GO:0005515
Dod01g1391 786 CDD WD40 509 786 - -
Dod01g1391 786 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 11 786 - -
Dod01g1391 786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 505 540 - -
Dod01g1391 786 MobiDBLite consensus disorder prediction 305 421 - -
Dod01g1391 786 SUPERFAMILY WD40 repeat-like 503 786 IPR036322 GO:0005515
Dod01g1391 786 Gene3D - 479 637 IPR015943 GO:0005515
Dod01g1391 786 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 11 786 IPR044716 GO:0003714
Dod01g1391 786 SMART WD40_4 540 579 IPR001680 GO:0005515
Dod01g1391 786 SMART WD40_4 747 786 IPR001680 GO:0005515
Dod01g1391 786 SMART WD40_4 583 623 IPR001680 GO:0005515
Dod01g1391 786 SMART WD40_4 665 703 IPR001680 GO:0005515
Dod01g1391 786 SMART WD40_4 706 745 IPR001680 GO:0005515
Dod01g1391 786 SMART WD40_4 626 662 IPR001680 GO:0005515
Dod01g1391 786 SMART WD40_4 498 537 IPR001680 GO:0005515
Dod01g1391 786 Coils Coil 87 107 - -
Dod01g1391 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 754 786 IPR001680 GO:0005515
Dod01g1391 786 ProSiteProfiles LIS1 homology (LisH) motif profile. 16 48 IPR006594 GO:0005515
Dod01g1391 786 ProSitePatterns Trp-Asp (WD) repeats signature. 524 538 IPR019775 -
Dod01g1391 786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 547 579 - -
Dod01g1391 786 MobiDBLite consensus disorder prediction 334 421 - -
Dod01g1391 786 Pfam WD domain, G-beta repeat 510 537 IPR001680 GO:0005515
Dod01g1391 786 Pfam WD domain, G-beta repeat 668 702 IPR001680 GO:0005515
Dod01g1391 786 Pfam WD domain, G-beta repeat 752 786 IPR001680 GO:0005515
Dod01g1391 786 Pfam WD domain, G-beta repeat 586 623 IPR001680 GO:0005515
Dod01g1391 786 Pfam WD domain, G-beta repeat 545 579 IPR001680 GO:0005515
Dod01g1391 786 SMART Lish 16 48 IPR006594 GO:0005515
Dod01g1391 786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 754 786 - -
Dod01g1391 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 547 579 IPR001680 GO:0005515
Dod01g1391 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 590 632 IPR001680 GO:0005515
Dod01g1391 786 PRINTS G protein beta WD-40 repeat signature 773 786 IPR020472 -
Dod01g1391 786 PRINTS G protein beta WD-40 repeat signature 524 538 IPR020472 -
Dod01g1391 786 PRINTS G protein beta WD-40 repeat signature 566 580 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1391 Dod-Chr1 31056113 31065486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1391 584 785 Miscellaneous Gene Families AT5G08390 22.222 5.03e-10 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Dod01g1391 WD40 0.0084 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1391 - - gmx:100799686 1183.32