Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1361 ATGGTGGTGGTGAGAGAGCAGCAAGAGAGTGAGGATCGAAACGCGAATCCCTCCAACGCCGGTGCCGGCAACGACCCTTCCGACGGCTTCGAAACCGCCAGCGACGCCGACCTTGGCAGCGACGGCGAAGGAGGCGGCGACGATGGTGGAGCTATCGGCCGTCAAGATCGGGAGCAGAGTGATCAACAGCACGAGCAACAGCACCAACAGCAGCAGCCGCAGACAGAGCCGGAGCAGGGTGTTCCTCCGAGAGGCGATTCCTCCGATGATGCCTCGATCAGCGAGGAGTTGACGCAGATGGAAAGTACTGAGGAGGCGTTATCACAGTATGAACTTGCTCTACAAGTCACACTTGACATGCCTTCGTCTGTGGAAATACGATCAATATGCCATGCAAACCGTGCTGTGTGCTTTCAGAAACTGGGAAAATCTGAAAACACAGTTAAAGAATGCACAAAAGCATTAGAACTGAATCCTGTGTATGTTAAAGCTTTGGTAAGAAGAGGAGAGGCTCAAGAAAAGCTTGAACATTTTGAAGAGGCCATTGCTGATATGAAAAAGATTTTGGAAATTGATCCCTCAAATGATCAAGCTAGGAAGGCCATTCGCCGACTAGAGCCGCTTGCTGCAGAAAAGCGGGAAAAGATGAAGGAAGAAATGATTGCAAAACTGAAAGATATGGGCAATTCAGTCTTGGGCCGGTTTGGGATGAGTGTGGATAACTTTAAAGCAGTCAAAGATCCAAACACTGGTTCCTATTCTCTCTCATTCCAGCGTTAA 780 0.4962 MVVVREQQESEDRNANPSNAGAGNDPSDGFETASDADLGSDGEGGGDDGGAIGRQDREQSDQQHEQQHQQQQPQTEPEQGVPPRGDSSDDASISEELTQMESTEEALSQYELALQVTLDMPSSVEIRSICHANRAVCFQKLGKSENTVKECTKALELNPVYVKALVRRGEAQEKLEHFEEAIADMKKILEIDPSNDQARKAIRRLEPLAAEKREKMKEEMIAKLKDMGNSVLGRFGMSVDNFKAVKDPNTGSYSLSFQR* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1361 259 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 28 259 - -
Dod01g1361 259 Coils Coil 93 113 - -
Dod01g1361 259 Coils Coil 168 188 - -
Dod01g1361 259 SMART tpr_5 128 161 IPR019734 GO:0005515
Dod01g1361 259 SMART tpr_5 162 195 IPR019734 GO:0005515
Dod01g1361 259 Pfam Tetratricopeptide repeat 132 159 IPR019734 GO:0005515
Dod01g1361 259 Gene3D Tetratricopeptide repeat domain 92 229 IPR011990 GO:0005515
Dod01g1361 259 SUPERFAMILY TPR-like 97 206 IPR011990 GO:0005515
Dod01g1361 259 MobiDBLite consensus disorder prediction 1 91 - -
Dod01g1361 259 Pfam Tetratricopeptide repeat 163 195 IPR013105 -
Dod01g1361 259 ProSiteProfiles TPR repeat profile. 162 195 IPR019734 GO:0005515
Dod01g1361 259 MobiDBLite consensus disorder prediction 50 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1361 Dod-Chr1 29471772 29476662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1361 126 229 Calmodulin-binding Proteins AT3G25230 39.423 2.38e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1361 K24926 - gmx:100808386 303.138