LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod01g1359	ATGGAGGTGCAGTCTCTGCGATGCTTCACCCTCTGTGTTCTGCTGATCGTGTGGGTGCTGGTTTCAACTGGCGCCAATGCAATCAACTACAATGAGGAAAAAGTAATGGAGCCAAGGGACGTAGGAGAAGCGAAGTTGCAGAGCTTGAAGAGTTCGTCATTAATGGCGGAAAGATCAGGGGATGCATTGAATGAACATGCAGTTGATAATCCAGAGGAGATAGCTTCAATGGTTGATATGAGCATACGCAACCACACGGAGAGAAGGAATCTGAACTTCTTCTCATCATGTGGGACTGGGAACCCAATCGACGACTGCTGGCGCTGCGACCGACGGTGGTACCTCCGCCGCAAGCGCCTCGCCGACTGCGCCATCGGGTTCGGCCGCAACGCCATTGGCGGCCGTGACGGCAGGTACTACGTCGTCACCGACCCCTCAGACGACGATGCCGTCAACCCCAAGCCCGGCACCCTCCGCCATGCCGTCATCCAGGACAGGCCCCTCTGGATCGTGTTCAAGCGGGACATGGTCATCACCCTCAAGCAGGAGCTTATCATGAACAGCTTCAAGACCATCGATGGCCGCGGCGCCAACGTCCACATCGCCCACGGCGCCTGCATCACCATCCAGTTCATCACTAACATCATCATCCACGGCATCCATATTCATGACTGCATCCAAACCGGCAACGCCATGGTTCGTAGCTCCCCCTCGCATTACGGGTGGAGGACCCTTGCTGATGGGGACGGGATTTCCATCTTTGGCGCCAGTCACATATGGATTGACCACAACTCGCTATCTAATTGCTCTGACGGGCTTATTGATGCTATTATTGCTTCTACTGCTATTACCATTTCGAATAACTACTTTACCAACCACAATGAGGTTATGCTACTGGGTCACAGTGACTCGTATGTTCGAGACAAGCAGATGCAAGTAACCATTGCGTACAACCATTTTGGGGAGGGCCTTATGCAGAGAATGCCGAGGTGCAGACATGGGTATTTTCACGTGGTAAACAATGATTATACCCACTGGGAAATGTATGCAATTGGTGGCAGTGCTGATCCCACAATTAACAGCCAAGGCAACAGATACCTTGCCCCTCAGAACCATTTTACAAAAGAGGTGACAAAGAGAGTGGATACAGGGGAATCCATATGGAAAAGTTGGAATTGGAGGTCTGAAGGAGACTTGCTATTGAATGGTGCCTTTTTCACTTCATCAGGAGCAGGAGCTGCACCAAGCTATGCTAGAGCCTCAAGTTTAGCGGCCAAATCCTCTTCTTTGGTTGGTACCCTTACCTCTGGTGCTGGTGTTCTTAACTGCCGCAGGGGTGTCATGTGTTAG	1350	0.5163	MEVQSLRCFTLCVLLIVWVLVSTGANAINYNEEKVMEPRDVGEAKLQSLKSSSLMAERSGDALNEHAVDNPEEIASMVDMSIRNHTERRNLNFFSSCGTGNPIDDCWRCDRRWYLRRKRLADCAIGFGRNAIGGRDGRYYVVTDPSDDDAVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAHGACITIQFITNIIIHGIHIHDCIQTGNAMVRSSPSHYGWRTLADGDGISIFGASHIWIDHNSLSNCSDGLIDAIIASTAITISNNYFTNHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLMQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPQNHFTKEVTKRVDTGESIWKSWNWRSEGDLLLNGAFFTSSGAGAAPSYARASSLAAKSSSLVGTLTSGAGVLNCRRGVMC*	450

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod01g1359	449	PRINTS	Pollen allergen Amb family signature	147	172	IPR018082	-
	Dod01g1359	449	PRINTS	Pollen allergen Amb family signature	420	443	IPR018082	-
	Dod01g1359	449	PRINTS	Pollen allergen Amb family signature	391	415	IPR018082	-
	Dod01g1359	449	PRINTS	Pollen allergen Amb family signature	183	199	IPR018082	-
	Dod01g1359	449	PRINTS	Pollen allergen Amb family signature	247	268	IPR018082	-
	Dod01g1359	449	PRINTS	Pollen allergen Amb family signature	327	346	IPR018082	-
	Dod01g1359	449	PRINTS	Pollen allergen Amb family signature	349	368	IPR018082	-
	Dod01g1359	449	PRINTS	Pollen allergen Amb family signature	123	140	IPR018082	-
	Dod01g1359	449	SUPERFAMILY	Pectin lyase-like	78	444	IPR011050	-
	Dod01g1359	449	SMART	amb_all	175	372	IPR002022	-
	Dod01g1359	449	Gene3D	-	100	442	IPR012334	-
	Dod01g1359	449	PANTHER	PECTATE LYASE 18-RELATED	17	446	IPR045032	GO:0030570
	Dod01g1359	449	PANTHER	PECTATE LYASE	17	446	-	-
	Dod01g1359	449	Pfam	Pectate lyase	183	364	IPR002022	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod01g1359	Dod-Chr1	29412276	29418085	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod01g1359	30	449	Polysaccharide Lyase	AT4G13710	73.770	0.0	668

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod01g1359	K01728		-	gmx:100809277	731.095