Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1358 ATGTCTGGAGAGAGAAGCTCAAGAACTTCAAAGTTCACAGAGAATGAGATCAAAGATCTTGTGTCAAGGTTGCAAGTGCTTCTGCCACAACTGAACAGAAGAAGCAACTCAAGGCAATCAGCATCGAATATATTGCAAGAAACCTGCAATCACATTAGGAGGCTGCAGAAAGAGGTGGACGACCTAAGTGAAAGGCTAGCAGTGCTTATGGATTCTTTGGATATTAGTGATATTGACAGAAGAGCTTTAGAAAACCTTTTGCAACAATAA 270 0.4074 MSGERSSRTSKFTENEIKDLVSRLQVLLPQLNRRSNSRQSASNILQETCNHIRRLQKEVDDLSERLAVLMDSLDISDIDRRALENLLQQ* 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1358 89 PANTHER DNA BINDING PROTEIN 1 89 - -
Dod01g1358 89 PANTHER DNA BINDING PROTEIN 1 89 IPR044172 -
Dod01g1358 89 Pfam Helix-loop-helix DNA-binding domain 16 56 IPR011598 GO:0046983
Dod01g1358 89 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 71 IPR036638 GO:0046983
Dod01g1358 89 Coils Coil 45 72 - -
Dod01g1358 89 Gene3D - 7 86 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1358 Dod-Chr1 29347449 29348439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1358 5 74 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 53.521 3.21e-17 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod01g1358 HLH 7.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1358 - - gmx:100790746 100.908