Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1352 ATGCCTGTGGCTGGGTTTTTGAGGCAATTGCCAATGTCAATGCCGAGGCAGGCCTTGAGCAACCACAACCAAATGCCAAGGCAAGCTTTCATCACAAACCATCACCATCTTCACCATGTTCTCCATGTTCTCCTCTTTACACTTCTTGCTCCTTTTTCTTTTGCTGCAAACAATGAAGCCAGTGCTTTACTTTCATGGGTGTATAGCTCCTCCAGTGTTCCTTCACCTCTTTCTAACTGGAACCCTTTGGACTCTAGTCCATGCAAATGGTCTTACATCAAATGCTCCTCAGAAAGCCATGTCATTGAGATAAACATCCAATCAGTGGAGTTAGATCTTCCTTTTCCTTCCAAAATTCCATCACTTCCTTTCCTTCAAAAGCTTGTCATTTCAGGTGCTAACCTCACTGGGACTATCTCACCTGACATTGGGAACTGCCTTCAGCTTACAGTCATTGACCTCAGCTCAAATAGTCTTGTGGGAAGCATTCCTTCAAGCATTGGAATGCTCAAAAATCTCCAAGACTTGAGCTTGAACTCTAACCAGCTCAGTGGTCCAATCCCAAGGGAACTTGGTGATTGTGTTAGTCTTAAGAACCTTGACATATTTGACAACAACCTTAGTGGAGAACTTCCTGCTGAGCTGGGAAAGGTGTCAAGGTTGGAGGTTATACGAGCTGGAGGAAACAAAGACATTGTTGGGAAGATTCCAGAGGAGCTCGGTGATTGCAGTAATTTGACTGTATTAGGACTTGCTGACACTAAGATTTCTGGTTCAATGCCTGCTTCATTGGGTAAGCTAATCAGGCTTCAGACCTTGTCAATTTACGGTACTATGCTCTCTGGTGAGATTCCTCATGAAATAGGCAACTGCTCAGAGCTAGTGAACTTGTTTTTGTATGAGAATGATCTCTCTGGTTCCCTGCCAAAAGAGCTAGGCAAGCTTCAGAAACTGGAAAAGATGTTGCTGTGGCAGAACAATTTTGCTGGGAGCATACCTGAGGAAATTGGCAGCTGCAGAAGCTTGAAGATTCTTGATGTATCCTTGAACTCTTTATCTGGTAGCATACCTCAGAGGTTGGGGGAACTCTCAAACATTGAAGAGCTTATGCTGAGTAACAACAACATCTCTGGTTCGATACCACCTGCGCTTTCCAATCTTACAAACCTCATACAGTTGCAGTTAGATACTAATCAGCTGTCAGGTCCAGTTCCACCTGAGCTTGGAAGGTTGACAAAGCTAACGGTCTTTTTTGCCTGGCAGAATAAGCTTGAAGGTGGCATCCCATCAGCATTGGGTGGTTGTACAAGCCTTGAAGCCTTGGATTTGTCATACAATGCACTCAGTGATAGCTTACCCCCTGGCCTGTTTAAGCTTCAAAATTTAACAAAGCTTCTACTAATCTCAAATGATATTTATGGCTCCATTCCCCCTGAGATTGGTAACTGCAGCTCTCTCATTCGCCTGCGACTTGTAAACAACAGAATCAGTGGAGACATACCAAGAGAAATTGGCTACCTCAGTAACCTTAGTTTCCTTGATCTGTCTGAAAATCATCTTACTGGGTCAGTGCCGCATGAGATTGGAAACTGCAAAGATTTGCAAATGCTGAATCTAAGCAATAACTCACTTTCTGGTGCTTTGCCTAGTTACTTGTCTTCTCTCACAAGGCTTGAGGTCTTGGATGTTTCTCTGAATAACTTTACTGGTGAGGTACCAATGGGTATTGGCCAACTCACTTCACTCCTTAGACTCATCCTAAGCAAAAATTCTTTTTCTGGCTCAATTCCCTCCTCACTTGGGCAATGCTCAGGTCTTCAACTGCTAGACCTTAGCAGTAACATGTTCTCGGGTAGCATCCCACCAGAACTGTTTCAGATTGAAGCACTTGATATTGCTCTAAATTTGAGCCAAAATGCATTATCTGGAGCAATCCCACCAGAGATTTCTTCTTTGACCAAGCTGTCTGTTCTAGACCTTTCACACAACAAGCTCGAAGGTGACTTGATGGTATTCTCAGGCCTTGAAAATCTTGTTTCTCTGAATATTTCCTACAACAAATTCACAGGTTATCTACCAGACAGCAAGTTATTCCACCAGCTATCAGCAACAGATTTAGCAGGAAATCAAGGTGTGTGTCCTAGTGGTCATGACTCTTGTTTTGTTAGCAATGCTGCAATGATAAAAATGCTAAATGGCACTAATTCTAAGAGGACAGAGATAATCAAAATGGCCATTGGATTGCTCAGTGCCTTGACTGTTGCAATGGCAATCTGTGGAGTTGTTACAGTCTTTCGAGCGAGGAACATTGTCCGAGATGACAATGATTCTGAGATCAGAGGAGACTCATGGCCTTGGCAGTTCACCCCATTCCAAAAGGTAAATTTCTCGGTGGAGCAAGTTCTAAAATGTTTGGTGGAGTCCAATGTAATTGGAAAGGGGTTTTCAGGGATTGTGTACCGTGCAGAACTGGAAAATGGGGATGTCATTGCTGTGAAAAAGCTGTGGCCAACAACAATGGCTGCCAAATATGACTGTCAAAATGACAAGTTAGCAGTTAATGGAGCAGTTCGTGATTCCTTTTCTGCTGAGGTGAAAACTCTTGGCTCAATTCGCCACAAGAACATTGTGAGGTTCCTGGGTTGCTGTTGGAACAGGAACACAAGATTGCTTATGTATGACTATATGCCAAATGGGAGTCTAGGAAGCCTACTTCATGAAAGAAGTTGCAACTGCTTGGAGTGGGACATCAGATTTCGGATAATACTTGGAGCAGCTGAAGGCTTGGCTTATTTACACCATGATTGTGCTCCTCCCATTGTTCACAGGGACATTAAGGCCAACAACATCCTCATAGGCCCTGAATTTGAGCCATACATTGCTGATTTCGGGCTTGCCAAACTTGTTGATGATGGAGATTTTGCAAGATCATCCAGTACACTAGCTGGTTCCTATGGATACATAGCTCCTGAGTATGGATATATGTTGAAGATAACAGAGAAAAGTGATGTATACAGCTATGGTATTGTTGTATTAGAAGTGCTAACAGGGAAGCAACCAATTGATCCAACAATACCAGATGGACTCCACATTGTTGACTGGGTGAGACAGAAAAGAGGGGGAGTTGAGGTGCTAGATGAAAGCCTGCGTGCAAGGCCAGAATCCGAAATTGAAGAAATGTTGCAGACCTTAGGTGTGGCTTTGTTGTGTGTGAACTCAAGCCCAGATGACAGGCCAACCATGAAAGATGTGGCAGCAATGATAAAAGAAATTAGGCTGGAAAGAGAGGAAAATATGAAGGTTAGCATGCTCCTTGATGGATCTTCTTCAAATGACCAACAAGGAAGTGATCATTCCAATGAAGAACCGACGGCAAAGATGAAGCATGCGTGCTCAATAAGCAGCAGCAACATAAATCTGCATCTACATCGCTCTCTCCATAGTCCTCCTATACTGAAGTGA 3462 0.4341 MPVAGFLRQLPMSMPRQALSNHNQMPRQAFITNHHHLHHVLHVLLFTLLAPFSFAANNEASALLSWVYSSSSVPSPLSNWNPLDSSPCKWSYIKCSSESHVIEINIQSVELDLPFPSKIPSLPFLQKLVISGANLTGTISPDIGNCLQLTVIDLSSNSLVGSIPSSIGMLKNLQDLSLNSNQLSGPIPRELGDCVSLKNLDIFDNNLSGELPAELGKVSRLEVIRAGGNKDIVGKIPEELGDCSNLTVLGLADTKISGSMPASLGKLIRLQTLSIYGTMLSGEIPHEIGNCSELVNLFLYENDLSGSLPKELGKLQKLEKMLLWQNNFAGSIPEEIGSCRSLKILDVSLNSLSGSIPQRLGELSNIEELMLSNNNISGSIPPALSNLTNLIQLQLDTNQLSGPVPPELGRLTKLTVFFAWQNKLEGGIPSALGGCTSLEALDLSYNALSDSLPPGLFKLQNLTKLLLISNDIYGSIPPEIGNCSSLIRLRLVNNRISGDIPREIGYLSNLSFLDLSENHLTGSVPHEIGNCKDLQMLNLSNNSLSGALPSYLSSLTRLEVLDVSLNNFTGEVPMGIGQLTSLLRLILSKNSFSGSIPSSLGQCSGLQLLDLSSNMFSGSIPPELFQIEALDIALNLSQNALSGAIPPEISSLTKLSVLDLSHNKLEGDLMVFSGLENLVSLNISYNKFTGYLPDSKLFHQLSATDLAGNQGVCPSGHDSCFVSNAAMIKMLNGTNSKRTEIIKMAIGLLSALTVAMAICGVVTVFRARNIVRDDNDSEIRGDSWPWQFTPFQKVNFSVEQVLKCLVESNVIGKGFSGIVYRAELENGDVIAVKKLWPTTMAAKYDCQNDKLAVNGAVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGSLLHERSCNCLEWDIRFRIILGAAEGLAYLHHDCAPPIVHRDIKANNILIGPEFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPEYGYMLKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRQKRGGVEVLDESLRARPESEIEEMLQTLGVALLCVNSSPDDRPTMKDVAAMIKEIRLEREENMKVSMLLDGSSSNDQQGSDHSNEEPTAKMKHACSISSSNINLHLHRSLHSPPILK* 1154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1352 1153 Pfam Protein tyrosine and serine/threonine kinase 808 1086 IPR001245 GO:0004672|GO:0006468
Dod01g1352 1153 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 26 1112 - -
Dod01g1352 1153 SUPERFAMILY RNI-like 235 569 - -
Dod01g1352 1153 SUPERFAMILY Protein kinase-like (PK-like) 788 1088 IPR011009 -
Dod01g1352 1153 ProSitePatterns Serine/Threonine protein kinases active-site signature. 940 952 IPR008271 GO:0004672|GO:0006468
Dod01g1352 1153 Gene3D Transferase(Phosphotransferase) domain 1 896 1111 - -
Dod01g1352 1153 PRINTS Leucine-rich repeat signature 652 665 - -
Dod01g1352 1153 PRINTS Leucine-rich repeat signature 510 523 - -
Dod01g1352 1153 Pfam Leucine rich repeat N-terminal domain 56 96 IPR013210 -
Dod01g1352 1153 SMART LRR_typ_2 387 411 IPR003591 -
Dod01g1352 1153 SMART LRR_typ_2 652 674 IPR003591 -
Dod01g1352 1153 SMART LRR_typ_2 170 194 IPR003591 -
Dod01g1352 1153 SMART LRR_typ_2 363 386 IPR003591 -
Dod01g1352 1153 SMART LRR_typ_2 435 459 IPR003591 -
Dod01g1352 1153 SMART LRR_typ_2 579 603 IPR003591 -
Dod01g1352 1153 SMART LRR_typ_2 507 531 IPR003591 -
Dod01g1352 1153 SMART LRR_typ_2 675 700 IPR003591 -
Dod01g1352 1153 SMART LRR_typ_2 604 627 IPR003591 -
Dod01g1352 1153 SMART LRR_typ_2 315 339 IPR003591 -
Dod01g1352 1153 Gene3D Ribonuclease Inhibitor 633 720 IPR032675 -
Dod01g1352 1153 Gene3D Ribonuclease Inhibitor 361 451 IPR032675 -
Dod01g1352 1153 Gene3D Phosphorylase Kinase; domain 1 789 895 - -
Dod01g1352 1153 Gene3D Ribonuclease Inhibitor 55 214 IPR032675 -
Dod01g1352 1153 Gene3D Ribonuclease Inhibitor 548 632 IPR032675 -
Dod01g1352 1153 SMART LRR_sd22_2 170 202 - -
Dod01g1352 1153 SMART LRR_sd22_2 411 443 - -
Dod01g1352 1153 SMART LRR_sd22_2 363 389 - -
Dod01g1352 1153 SMART LRR_sd22_2 652 677 - -
Dod01g1352 1153 Pfam Leucine rich repeat 485 544 IPR001611 GO:0005515
Dod01g1352 1153 Pfam Leucine rich repeat 148 207 IPR001611 GO:0005515
Dod01g1352 1153 MobiDBLite consensus disorder prediction 1106 1128 - -
Dod01g1352 1153 SUPERFAMILY L domain-like 57 328 - -
Dod01g1352 1153 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RCH1 26 1112 - -
Dod01g1352 1153 ProSiteProfiles Protein kinase domain profile. 805 1093 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g1352 1153 Gene3D Ribonuclease Inhibitor 452 547 IPR032675 -
Dod01g1352 1153 SMART serkin_6 805 1088 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g1352 1153 SUPERFAMILY L domain-like 500 714 - -
Dod01g1352 1153 Gene3D Ribonuclease Inhibitor 218 291 IPR032675 -
Dod01g1352 1153 Gene3D Ribonuclease Inhibitor 292 360 IPR032675 -
Dod01g1352 1153 ProSiteProfiles Leucine-rich repeat profile. 365 388 IPR001611 GO:0005515
Dod01g1352 1153 ProSitePatterns Protein kinases ATP-binding region signature. 811 843 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1352 Dod-Chr1 29044694 29048508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1352 54 1097 Receptor kinase-like Gene Family AT5G56040 47.597 0.0 966
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dod01g1352 PK_Tyr_Ser-Thr 1.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1352 - - gmx:100794698 1850.87