Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1346 ATGGCGGAATGCGAGGTCTCTTCGTTGCTCCAACACCTGATCCGCGCCGCCACCAAAACCTCGGAGATCTGCGGCTTCAAGCGCGTCATCAAGAAGCAATGCAGCGACCTCGGCCGCAGGATCATGTTCCTTACCCCTCTCTTCCAAGAATTGCTCGACGTAAGGGACGCCATCCCAAACGACGCCGTTTCGGTCCTTCTATCTCTCAAGGAAACCCTGGCCAAGGCCAAGGAATTGCTCGAGTTCTGTTGCCGCGGAAGCCAGGTTTACATGATACTGGAGAGAGAGCAAATTAAGTACAAATTTATTGATCTTTCTGTTCATTTTGAACAAGCTCTAGGAAAGATATTATTTGACAGACTTGATATATCTGAAGAGGTCAAGGAGCAGGTTGCACTAGTGACTGCTCAATTTAGAAGAGCCAAGGAGCTTTTTGATCCACCTGGCCTTCACCTTTATGATCATCTGTTGTCCATTTACAACCAGAGTTATGATGTAAATACTGAACCTGCCAAACTAAATATAATATGTGAAAAGCTACACTTTTTGACAGTCGAAGACATCAAACAAGAGTCCCTTGCACTTCATAAGATGGTTGTAGATATGGATGGTCATTTTGAGAAAAGCACACGGAAGATGTCTTTAGTTCTGAAAAAAATTGAAGATTTCGTGCTGACAAGATCTGCAAATAATCGAGTGTCATCAACTGAGGAGTCCCTTGCTCATACTGACGAGCCATACACAAAACTATGTGTTCAATCACAGGTTATACCAGACGAGTTTTGCTGTCCAATATCTCTAGAGTTAATGAAAGATCCTGTTATCATTTGTACAGGGCAGACATATGAACGAGCATGCATAAAGAAATGGCTTGAAGCAGGGCATGGAACGTGTCCTAAGACTCAGCAGATTCTTTCAAGCTCTGTCCTTATACCCAACCATGTTTTATATAGCCTGATATCAAATTGGTGCGAGGCAAATGGAGTGGAACCACCTAAAAGGTTAGGAAATTTTCGGCTCTGCAAGGCAACATCAGATGGCTCTTGTGAATTTATAGATATCAATGTCCTAATAAGCAGACTTACTTCAAGTGACATTGAAGATCAGCGATGCGCAGCAGGCGAGCTCCGTTTACTTGCCAAGCACAACAGTCAAAATCGATTGTTGATTGCTGAGGCTGGTGCTATACCCCTTCTTGTTGTTCTTCTCTATGTACCTGATGCAGGCACCCAAGAGCATGCAGTTACTGCTCTTCTGAACCTATCTATTTGTTCGGATAATAAAGTGCGCATCATGACTTCTGAAGCTCTGCTGGGAATCCTTTATGTGCTAAAAAATGGTAGTATGGTAGCACGGGAAAATGCAGCAGCCACCTTTTTCAGCCTCTCTTTGTTGAATGAGAACAAAGTGGCAATTGGTGCCTCTGGGGCAATCCAAGCACTTGTTATGCTTTTTTGTGAGGGAAGCCAAAGAGGGAAGGTGGATGCCGCAACAGCACTATTCAATCTGTGTTTATATCAAGGGAACAAAGGACGGGCAATAAGAGCCGGCATTGTGCCCAAGTTGATGGAAATGCTAACAGAACCTGGTGGGGAGATGAGGGATGAGGCACTGGCAATTATGGCTGTACTAGTTAGCCACCCTGAGGGTAAAGCAGCAATTGGATCCATGAATGCTGTGCCCACTTTGGTGGATTTAGTCACTAATGGATCTTCTAAGAACAAAGAGAATGCAACTTCAGTGCTGGTGCACCTCTGTGGTGGGGATCCACTGCATGTGTCAAGTGTCTGTTCCCTTGGGGTGATCAATCCTCTCTTGGACCTTGCGGAAAACGGTTCAGAAAGGGGGAAGCGGAAAGCTATCCAGCTTCTTGAGCTGATAGGCATTTGGAGACAGTTGTAG 1902 0.4495 MAECEVSSLLQHLIRAATKTSEICGFKRVIKKQCSDLGRRIMFLTPLFQELLDVRDAIPNDAVSVLLSLKETLAKAKELLEFCCRGSQVYMILEREQIKYKFIDLSVHFEQALGKILFDRLDISEEVKEQVALVTAQFRRAKELFDPPGLHLYDHLLSIYNQSYDVNTEPAKLNIICEKLHFLTVEDIKQESLALHKMVVDMDGHFEKSTRKMSLVLKKIEDFVLTRSANNRVSSTEESLAHTDEPYTKLCVQSQVIPDEFCCPISLELMKDPVIICTGQTYERACIKKWLEAGHGTCPKTQQILSSSVLIPNHVLYSLISNWCEANGVEPPKRLGNFRLCKATSDGSCEFIDINVLISRLTSSDIEDQRCAAGELRLLAKHNSQNRLLIAEAGAIPLLVVLLYVPDAGTQEHAVTALLNLSICSDNKVRIMTSEALLGILYVLKNGSMVARENAAATFFSLSLLNENKVAIGASGAIQALVMLFCEGSQRGKVDAATALFNLCLYQGNKGRAIRAGIVPKLMEMLTEPGGEMRDEALAIMAVLVSHPEGKAAIGSMNAVPTLVDLVTNGSSKNKENATSVLVHLCGGDPLHVSSVCSLGVINPLLDLAENGSERGKRKAIQLLELIGIWRQL* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1346 633 SMART Ubox_2 260 323 IPR003613 GO:0004842|GO:0016567
Dod01g1346 633 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 394 436 IPR000225 GO:0005515
Dod01g1346 633 SMART arm_5 465 505 IPR000225 GO:0005515
Dod01g1346 633 SMART arm_5 506 546 IPR000225 GO:0005515
Dod01g1346 633 SMART arm_5 547 587 IPR000225 GO:0005515
Dod01g1346 633 SMART arm_5 383 423 IPR000225 GO:0005515
Dod01g1346 633 SMART arm_5 589 629 IPR000225 GO:0005515
Dod01g1346 633 Gene3D - 343 627 IPR011989 -
Dod01g1346 633 SUPERFAMILY ARM repeat 354 627 IPR016024 -
Dod01g1346 633 Gene3D - 6 119 IPR036537 GO:0007166
Dod01g1346 633 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 627 - -
Dod01g1346 633 Pfam Armadillo/beta-catenin-like repeat 383 422 IPR000225 GO:0005515
Dod01g1346 633 Pfam Armadillo/beta-catenin-like repeat 466 504 IPR000225 GO:0005515
Dod01g1346 633 Pfam Armadillo/beta-catenin-like repeat 548 586 IPR000225 GO:0005515
Dod01g1346 633 PANTHER U BOX DOMAIN-CONTAINING 7 627 - -
Dod01g1346 633 Pfam U-box domain 257 327 IPR003613 GO:0004842|GO:0016567
Dod01g1346 633 SUPERFAMILY RING/U-box 257 333 - -
Dod01g1346 633 CDD RING-Ubox_PUB 261 303 IPR045210 -
Dod01g1346 633 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 257 330 IPR013083 -
Dod01g1346 633 ProSiteProfiles U-box domain profile. 256 330 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1346 Dod-Chr1 28696452 28704227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1346 3 627 U-box Gene Family AT3G46510 53.035 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1346 - - var:108326899 811.986