Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1287 ATGTTGAATCGTGGCGGTGGTGGAGGAGAAGAAGAAGATGAGTTGTATGAGCAACTATGGGAAGCATGTGCAGGACCCCATGTGGATGTTCCTCGTGCAGGCCAAAGGGTCTTCTATTTTCCTCAGGGACACATGGAGCAATTGGAAGCATCAACAAATCAGGAACTAAATCAGAGGATTCCGGTGTTCAAACTTCCCACCAAGATCCTTTGTCGTGTCGTCAACGTCAATTTACTGGCTGAACAAGAAACGGATGAGGTTTATGCACAGATCACTTTGGTGCCAGAATCCAGTCAAGCTGAGCCTGGAAGCCCTGATCCGTGCCATGCTGAACTTTCAAGGCCAACAAGTCACTCCTTCTGCAAGGTCCTAACTGCCTCTGATACCAGCACTCATGGTGGATTCTCCGTTCTCAGGAAGCACGCCACCGAATGCCTTCCGGCTTTGGACATGTCTCAACCAACCCCAACTCAGGAATTGGTTGCCAAGGATCTTCATGGTTATGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCACGCAGGAACTTGCTCACAACTGGGTGGAGTACTTTTGTGACATCCAAGAGATTAGTTGCTGGAGATACCTTTGTGTTTCTGAGAGGGCACAATGGAGAATTACGCGTTGGAGTGAGGCATCTTGCTCCTCAGCAGAGCAGCATGCCTTCATCTGTGATTTCCAGTCAGAGCATGCACCTAGGAGTGCTTGCAACTGCATCTCACGCTGTTGCAACTCAGACTCTTTTTGTTGTTTATTATAAGCCAAGGAGGAGCCAGTTCATCGTAAGTGTGAACAAGTATCTTGATGCTGTTAACCACAAATTTGGTGTTGGTATGAGGTTCAAGATGAGATTTGAGGGCGAAGATTCACCTGAGACTGAGAAAAAATTTTCTGGTACAATAATTGGAGTAGAAGATATTTCTCCTTATTGGGTAAATTCAAATTGGAGATCACTTAAGGTTCAATGGGATGAACCTGCATCTGTTTCAAGACCTGATAGGGTCTCACCATGGGAGATAGAACCGCTTCTGGCTTCTGTTCCTACACCTTCAGTTCAACCTCCTGTTGTCAAGAATAAAAGGCCTCGGCCACCAAGTGAAGTTCATGAACTTGACGCGACATCAGCTGCTTCTGCTTTCTGGGATGCTGGGCTGGCACACTCGGATATAACCCAACTTAGTGTTATGCCTGAAAGCAAAATGAGTAATGGTACCCATATGTGGCATCATAAAAGCGGCTGCAATGCTATATCAAGGAATCAGATAGAAGGAAATTGGCTATCTTCTCCCAATTCTAGTGGTCCTTCTCATTTCTTTCAGGACACAACTGATGACAGCAAGAGTGCCTCAGCTTGGCCTATTTCGAAGACTCACTCCGAAAGATTGAACAATGATAATTTGCTTGAGCAAGTTGACAATGGGAACAAAGTAGAGACGGCTACAAGCTACCGATTGTTTGGAATTGAGCTCATTGATTATGCCAGGAACTCTCCTGTTGTAGAGAAGGCATGTGTACATGCAGCAAATGAATCTGGAGGCACCAATGAGGACTCTGTTAGCACCTTGTCCAGAACTGATGCAGACCATAATTCTGATATCTCAAAGGCTTCTAAAGAGGGTAAACAAGACCAGCTGCGAGTTTCAACAAAAGAGACCCAAAGCAAGCAAATCTGTAGCAGAAGCTGCACTAAGGTTCATATGCAGGGGGTTGCAGTGGGGCGTGCTGTGGACTTGACCATGTTGGATGGGTATGATCAACTTATAGTTGAATTGGAGAAGATGTTTGACATAAAGGGGGAGCTTCAACTCAGGAATAAGTGGGAAATTGTCTTCACTGATGATGAAGGGGATATGATGCTTGTTGGTGATGATCCATGGCCTGAATTCTGCAACATGGTGAGAAGGATCTTCATCTGCTCCAGCCAGGACGTGAAGAAAATGAGCCCAGGGAGCAAATTGCCTGTCTCTTCAACAGAAGAAGAGACTGTAATAAGCTCAGACACAGCTGAAACCTGA 2037 0.4561 MLNRGGGGGEEEDELYEQLWEACAGPHVDVPRAGQRVFYFPQGHMEQLEASTNQELNQRIPVFKLPTKILCRVVNVNLLAEQETDEVYAQITLVPESSQAEPGSPDPCHAELSRPTSHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRNLLTTGWSTFVTSKRLVAGDTFVFLRGHNGELRVGVRHLAPQQSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRRSQFIVSVNKYLDAVNHKFGVGMRFKMRFEGEDSPETEKKFSGTIIGVEDISPYWVNSNWRSLKVQWDEPASVSRPDRVSPWEIEPLLASVPTPSVQPPVVKNKRPRPPSEVHELDATSAASAFWDAGLAHSDITQLSVMPESKMSNGTHMWHHKSGCNAISRNQIEGNWLSSPNSSGPSHFFQDTTDDSKSASAWPISKTHSERLNNDNLLEQVDNGNKVETATSYRLFGIELIDYARNSPVVEKACVHAANESGGTNEDSVSTLSRTDADHNSDISKASKEGKQDQLRVSTKETQSKQICSRSCTKVHMQGVAVGRAVDLTMLDGYDQLIVELEKMFDIKGELQLRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVKKMSPGSKLPVSSTEEETVISSDTAET* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1287 678 ProSiteProfiles PB1 domain profile. 567 648 IPR000270 GO:0005515
Dod01g1287 678 MobiDBLite consensus disorder prediction 518 534 - -
Dod01g1287 678 MobiDBLite consensus disorder prediction 517 557 - -
Dod01g1287 678 MobiDBLite consensus disorder prediction 432 459 - -
Dod01g1287 678 Gene3D - 117 221 IPR015300 -
Dod01g1287 678 Pfam AUX/IAA family 548 603 IPR033389 -
Dod01g1287 678 Pfam AUX/IAA family 614 656 IPR033389 -
Dod01g1287 678 Gene3D - 563 655 - -
Dod01g1287 678 MobiDBLite consensus disorder prediction 652 678 - -
Dod01g1287 678 Pfam B3 DNA binding domain 120 219 IPR003340 GO:0003677
Dod01g1287 678 PANTHER AUXIN RESPONSE FACTOR 10 667 - -
Dod01g1287 678 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 667 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dod01g1287 678 MobiDBLite consensus disorder prediction 535 555 - -
Dod01g1287 678 Pfam Auxin response factor 246 327 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dod01g1287 678 Gene3D - 281 354 - -
Dod01g1287 678 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677
Dod01g1287 678 SMART B3_2 120 222 IPR003340 GO:0003677
Dod01g1287 678 SUPERFAMILY CAD & PB1 domains 570 643 - -
Dod01g1287 678 SUPERFAMILY DNA-binding pseudobarrel domain 110 249 IPR015300 -
Dod01g1287 678 CDD B3_DNA 118 219 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1287 Dod-Chr1 27016917 27022085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1287 1 660 B3 DNA Binding Superfamily AT4G23980 58.171 0.0 717
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dod01g1287 B3 5.6e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1287 K14486 - gmx:100779003 1043.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1287 01 27016917 27022085 Dod07g1383 07 37531872 37537052 PCT