Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1222 ATGGGTGGAGTTGCTTGGACAGAAGAAGAAGATCACCTGCTTAAGAAATGCATACAACAATATGGAGAAGGAAAATGGCATCGGGTTCCTCTATTGGCTGGCCTGAACAGGTGCCGAAAGAGCTGCAGGCTAAGATGGCTGAACTATCTCCGCCCCAACATCAAGAGAGGAAACTTTGTAGAGGAAGAAGTGCAGATGATTGTCAAACTCCACAAATTATTGGGCAACAGGTGGTCATTGATTGCAGGAAGGCTCCCAGGAAGGACAGCCAATGATGTGAAAAACTATTGGAACTGTCATCTGAGTAAGAAACTGAATGCTCTAGAAGCTGAAGACAGACAAATGACAAAAAATGTTGAAGTCATTAGGCCCCAGCCTAGAAACATTGGTTCAAGCTCAGTGAAGAGAAGGAGCCTCCTGCAGGGTGAGTCTATAACTGACCAAGGAGCTGAACAAGGTAGTGGCATGTCCTCAATGACATTTGATGCTGATGGACAGAGCCATATGCTTGAATCACAGCAAGACAACAACATATATTCATGCTTGGACCAGCAGGGCATTGTTGGTGAGTCGCCAATGGACTTCCAATTCGAAGGATTTGAAGCGATGATCAGTGGAGAGGGAAGTAGCAGCCAATGGGATTGGGATGACTGGCTCTTAGACATGGATCTGTATAAAGATTTTTCTTCTTAG 693 0.4517 MGGVAWTEEEDHLLKKCIQQYGEGKWHRVPLLAGLNRCRKSCRLRWLNYLRPNIKRGNFVEEEVQMIVKLHKLLGNRWSLIAGRLPGRTANDVKNYWNCHLSKKLNALEAEDRQMTKNVEVIRPQPRNIGSSSVKRRSLLQGESITDQGAEQGSGMSSMTFDADGQSHMLESQQDNNIYSCLDQQGIVGESPMDFQFEGFEAMISGEGSSSQWDWDDWLLDMDLYKDFSS* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1222 230 Gene3D - 4 55 - -
Dod01g1222 230 Pfam Myb-like DNA-binding domain 5 50 IPR001005 -
Dod01g1222 230 Pfam Myb-like DNA-binding domain 56 98 IPR001005 -
Dod01g1222 230 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Dod01g1222 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Dod01g1222 230 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 227 - -
Dod01g1222 230 Gene3D - 57 124 - -
Dod01g1222 230 SMART sant 2 52 IPR001005 -
Dod01g1222 230 SMART sant 55 103 IPR001005 -
Dod01g1222 230 ProSiteProfiles Myb-like domain profile. 6 50 IPR001005 -
Dod01g1222 230 MobiDBLite consensus disorder prediction 132 162 - -
Dod01g1222 230 CDD SANT 58 101 IPR001005 -
Dod01g1222 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Dod01g1222 230 SUPERFAMILY Homeodomain-like 5 97 IPR009057 -
Dod01g1222 230 CDD SANT 5 50 IPR001005 -
Dod01g1222 230 PANTHER MYB TRANSCRIPTION FACTOR 5 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1222 Dod-Chr1 25004323 25006256 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1222 5 216 MYB Transcription Factor Family AT1G66370 44.493 3.40e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod01g1222 Myb_DNA-binding 9.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1222 K09422 - gmx:100809746 376.711