Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1184 ATGCTTCAGATTCGGCTTAGTAAGGCTCCTGCCTCAGAGGGTTCGGCAGGGGCGAAGCCCTCTCCTGTTGAGACGGTTACGGTTGCTTGCCCTGACCATCTGGTCCTTGCTGATCTTCCTGTTGCAAAGGGTATTGGATCAGCTACTGCTGCTTCCCTTGTTAAGACATTGGGCCGTAGATCCCGCCGCCAGCTTGGTGAGCGAGTCCATTTCTGCGTTCGCTGTGATTTTCCAATTGCTATATATGGACGGCTGAGCCCTTGTGAGCATGCATTTTGTCTCGATTGTGCTAGAAGTGATTCAATTTGCTACCTGTGTGATGAACGAATCCAGAAGATTCAGACAATCAAAATGATGGAAGGAATCCTCATTTGTGCAGCTCCTCACTGTCTCAAGTCTTTCTTGAAGAAGGCTGAATTTGAGTCTCATATCCAAGACAGCCATGCTAACCTCCTACGACCCAATGCAGATAAAGAAGATGGAAACGAGTCTGAGGCACAAAGTGTTAGGCAATCTACAGCTTCAGATTCCACCGCCCGAGGTCCTCAAAGGCCAGTTTTTTCTCCGGGTTCAAATTCCCAGCAACATGATCAGGAAGACAAATCTCATCGACAGCCATCAAGAGAGCAACCATCTTCTAGGCCAAATCTGCAGCCAAAGCCACCATATTTTGGTCAGCAAAATCACCCTTCAGACACCCTCTCCGGCTCTGTCGGAGGTATTCAACAGGGCTTCCATCAACAAAGCTTTGACATGCAGCATCCCAATCAAGAACCTTCCCAGTTTGCTGACAGGCAGGGTCCAGAGGCCCCATTTCTTGATTATCCACCGATGCATTCTGGCCAACCTCCCAATATTCCCCCGACACTGGTTACTGCAAACCCAATGCTGAACCCTCCTATGCCATTTGGCTATCCCCCGTACCCGCAAGATCGAGCTCAACCGTTTTACAGTGCTGCTCCCTACGATATGCCTAGGCAGGACTCTGTATCTGATATGGGTGGAGACCAGAATTCATTGCTGAGTTTCCCACAAGGGGTCCCTAGTGGACCAAATTTTCCTGGAAATTATCCCCAGCCCTGGCATGCAGGAATTGGTGGTGTGCCTTTTGAACAAGGGCAGGGTGGTATGGTTGTGGATCCAAGGGATGCCAAAGGCATATTGGCACCACAGCCCCTCCCACCACCACCCCCACCTCCTCCCCACATGTCACATTTGAAGCAGAATTACTATTCTGGTGAAGTTGGACATGAAGGTCAGGGTTATGGTTGGCAGCATGATAACCGTGATAGCTTTGGTGGCCAAGGCTAG 1311 0.5004 MLQIRLSKAPASEGSAGAKPSPVETVTVACPDHLVLADLPVAKGIGSATAASLVKTLGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSICYLCDERIQKIQTIKMMEGILICAAPHCLKSFLKKAEFESHIQDSHANLLRPNADKEDGNESEAQSVRQSTASDSTARGPQRPVFSPGSNSQQHDQEDKSHRQPSREQPSSRPNLQPKPPYFGQQNHPSDTLSGSVGGIQQGFHQQSFDMQHPNQEPSQFADRQGPEAPFLDYPPMHSGQPPNIPPTLVTANPMLNPPMPFGYPPYPQDRAQPFYSAAPYDMPRQDSVSDMGGDQNSLLSFPQGVPSGPNFPGNYPQPWHAGIGGVPFEQGQGGMVVDPRDAKGILAPQPLPPPPPPPPHMSHLKQNYYSGEVGHEGQGYGWQHDNRDSFGGQG* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1184 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 120 IPR013083 -
Dod01g1184 436 MobiDBLite consensus disorder prediction 153 285 - -
Dod01g1184 436 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Dod01g1184 436 PRINTS Wilm's tumour protein signature 386 400 - -
Dod01g1184 436 PRINTS Wilm's tumour protein signature 333 349 - -
Dod01g1184 436 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI 1 410 - -
Dod01g1184 436 MobiDBLite consensus disorder prediction 388 404 - -
Dod01g1184 436 MobiDBLite consensus disorder prediction 209 263 - -
Dod01g1184 436 MobiDBLite consensus disorder prediction 1 22 - -
Dod01g1184 436 MobiDBLite consensus disorder prediction 380 436 - -
Dod01g1184 436 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Dod01g1184 436 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 410 IPR040383 GO:0016567|GO:0061630
Dod01g1184 436 MobiDBLite consensus disorder prediction 166 195 - -
Dod01g1184 436 CDD RING-HC_HAKAI_like 70 106 IPR040380 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1184 1 433 C2H2 Transcription Factor Family AT5G01160 46.818 3.17e-114 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1184 K15685 - gmx:100817582 750.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1184 01 24192833 24197826 Dod01g1184 01 24192833 24197826 ECH