Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1176 ATGATAGTTGCCATGGACTTGAATGCCTCACCGGTGCCGGAGGAAGATGAAGATCCTTTTGAAGGCCATCTCGAAGAATATAATGCACCAGAAGAGCACACAGAAACTGCAGTTGATATAGCGCGCCGGGAACGTGAAGAAAGAAAGAGACGGTTGAAGAGAGAACGTTCAGATGACAGACCTGTGCAAGTATCACAGTCTGGTTATGATCGGCTGTTTCCTACTAAGGCCCTTAAATCATATGACAGAAGCAAGCTTCCTCCGGGTTGGTTGGATTGCCCTTCCTTTGGCCAGGAAATTTGTTGCATGATACCATCTAAGGTTCCACTTGGTGAATCGTTTAATGACTACATTGCTCCTGGTAAAAGATACTCATTTAAACAAGTGATACATCAACAGAGAGTTTTAGGGAGAAAATGTGTAATATATATTATTCTTGTCACATTATATAACAAGAACAAAGCTGGCCGAGTGGATGATGGCTTGGTCTCGGTGATTGATTTGACGAATACTACACGGTACTATCCAGTGGCTGATCTTAAGAAAGAGGGTATCAAGCATGTTAAGATACAATGCAAGGGCCGCGATTCTGTACCCGATAATTTATCTGTTAATCATTTTGTCTATGAGGTTACACAATTTCTATCACGTCAAAAACACTCAAAGAAGTATATTTTGGTTCATTGTACACATGGTCATAATCGTACAGGATACATGATCATCCATTATCTAATGCGTGCTATGTCAATGTCTGTTACTCAGGCAATAAAAATATTTTCCGAAGCACGGCCTCCAGGAATCTACAAACCTGAGTACATTGATGCATTATATGCATTTTATCATGAAAAAAGGCCTGAAATGGTAGTTTGTCCTCCTACTCCTGAGTGGAAGAGAACTCCTGAACTTGTCGATCTCAATGGTGAAGCGGTGCCAGATGATGATGATGATGGAGTACCAGGCTCTCCATTGCATGAGAACCATGAGGCGGACACAGTGATGACAAATGATGATGTTTTGGGTGATGAGATACCTAGTGATCAGCAAGAGGCATTTCGACTGTTTTGCTATCAAACACTTAAATTGGGTATTGGGGCGAGGGGACACATGCAGTTTCCAGGGTCACACCCAGTTTCTTTAAACAGGGATAATTTACAGCTGTTACGACAACGTTACTATTATGCAACATGGAAAGCTGATGGAACAAGATATATGATGCTAATAACCATGGATGGATGTTATTTGATTGATAGAAATTTCAATTTTCGGAGGGTCCAGATGAGGTTTCCATGCAGGGTTACAAATGATGGCGTGGCTCATCATACCCACCACTTCACATTACTTGATGGGGAGATGATTATTGATAAATTGCCAGATTCACAGAAGCAGGAGAGGAGATACCTTATATATGATCTAATGGCAGTCAACCAAGTATCAGTAATAGAGCGACCTTTCTATGAACGGTGGAAAATGCTTGAGAAAGAAGTGATCGAACCCAGGAACCATGAACGATATTATAGCAAAAATCTTTACTATAGGTATGACCTGGAGCCATTCAGGGTGAGGAGGAAAGATTTTTGGTTGCTCTCTACTGTCACGAGGCTTTTAAACGAGTTCATTCCGAGACTATCACATGATGCAGATGGTCTCATATTTCAGGGTTGGGACGATCCTTATAAACCGCGCACTCATGAAGGACTCTTAAAGTGGAAATATGCGAATCTGAATTCGGTTGATTTTCTCTTTGAGATTGATGATGATCATCAACAACTTTTTCTCAATGAACGAGGAAAGAAGAGACTCATGGAAGGAACTAGGGTTGCATTCAGAGACGGATCAGATCCCTCTCTCTATTCAGGAAAGATCATTGAGTGTTCTTGGGATTCTGATAACCAGGAATGGGTTTGCCTTGCGAATCAGGACAGATAA 1926 0.4138 MIVAMDLNASPVPEEDEDPFEGHLEEYNAPEEHTETAVDIARREREERKRRLKRERSDDRPVQVSQSGYDRLFPTKALKSYDRSKLPPGWLDCPSFGQEICCMIPSKVPLGESFNDYIAPGKRYSFKQVIHQQRVLGRKCVIYIILVTLYNKNKAGRVDDGLVSVIDLTNTTRYYPVADLKKEGIKHVKIQCKGRDSVPDNLSVNHFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIIHYLMRAMSMSVTQAIKIFSEARPPGIYKPEYIDALYAFYHEKRPEMVVCPPTPEWKRTPELVDLNGEAVPDDDDDGVPGSPLHENHEADTVMTNDDVLGDEIPSDQQEAFRLFCYQTLKLGIGARGHMQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRNFNFRRVQMRFPCRVTNDGVAHHTHHFTLLDGEMIIDKLPDSQKQERRYLIYDLMAVNQVSVIERPFYERWKMLEKEVIEPRNHERYYSKNLYYRYDLEPFRVRRKDFWLLSTVTRLLNEFIPRLSHDADGLIFQGWDDPYKPRTHEGLLKWKYANLNSVDFLFEIDDDHQQLFLNERGKKRLMEGTRVAFRDGSDPSLYSGKIIECSWDSDNQEWVCLANQDR* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1176 641 ProSiteProfiles ATP-dependent DNA ligase family profile. 457 626 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Dod01g1176 641 Gene3D Protein tyrosine phosphatase superfamily 62 301 IPR029021 -
Dod01g1176 641 PIRSF mRNA_capping_HCE 148 640 IPR017074 GO:0004484|GO:0006370|GO:0140818
Dod01g1176 641 PIRSF mRNA_capping_HCE 73 155 IPR017074 GO:0004484|GO:0006370|GO:0140818
Dod01g1176 641 CDD Adenylation_mRNA_capping 363 571 IPR001339 GO:0004484|GO:0005524|GO:0006370
Dod01g1176 641 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 85 297 IPR029021 -
Dod01g1176 641 Coils Coil 38 58 - -
Dod01g1176 641 Gene3D DNA ligase/mRNA capping enzyme 334 570 - -
Dod01g1176 641 SMART dsp_5 141 282 IPR020422 GO:0006470|GO:0008138
Dod01g1176 641 ProSitePatterns Tyrosine specific protein phosphatases active site. 227 237 IPR016130 GO:0016311|GO:0016791
Dod01g1176 641 MobiDBLite consensus disorder prediction 1 66 - -
Dod01g1176 641 Pfam Dual specificity phosphatase, catalytic domain 162 280 IPR000340 GO:0008138|GO:0016311
Dod01g1176 641 Gene3D - 571 640 IPR012340 -
Dod01g1176 641 CDD RNA_5'-triphosphatase 89 277 - -
Dod01g1176 641 Pfam mRNA capping enzyme, catalytic domain 375 570 IPR001339 GO:0004484|GO:0005524|GO:0006370
Dod01g1176 641 MobiDBLite consensus disorder prediction 23 61 - -
Dod01g1176 641 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 205 274 IPR000387 GO:0016311|GO:0016791
Dod01g1176 641 PANTHER MRNA (GUANINE-N(7)-)-METHYLTRANSFERASE-RELATED 3 634 - -
Dod01g1176 641 PANTHER MRNA-CAPPING ENZYME 3 634 - -
Dod01g1176 641 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 335 571 - -
Dod01g1176 641 ProSiteProfiles Dual specificity protein phosphatase domain profile. 139 286 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1176 Dod-Chr1 24100455 24120529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1176 1 636 Protein tyrosine phosphatase (PTP) family AT3G09100 65.785 0.0 833
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1176 K13917 - gmx:100803597 1069.3