Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1165 ATGAATTGGGGAATTGAATTTCTCTCTCCAGCCTCCTATCTCCAAGACTCCAATTGGTTGTTCCAGGAAAGCAAGGGAGCCAAATGGACTCCACAAGAAAACAAGCTCTTTGAGAATGCTTTGGCTTCGTATGATAAGGACACCCCAGACCGATGGATGAGGGTGGCAGCCATGGTTCCAGGCAAAACTGTGGGTGATGTGATCAAACAGTACAGAGAACTTGAAGAAGATGTGTGTGTCATTGAAGCAGGCCTGATCCCAGTTCCCGGGTATAATAGTACCAGTTCTTTCACATTGGACTGGGTTAACAATCAAGGCTTTGATGGTTTCAAGCAGTTTTGTAGTATTGGTGGGAAAAGGGGTGCTTCCACTAGGCCATCTGAGCATGAAAGAAAGAAAGGGGTGCCATGGACTGAAGAAGAGCACAGGCAATTTCTGCTCGGTCTCAACAAGTATGGTAAAGGGGATTGGAGAAACATCTCTAGGAGCTTTGTGACCACAAGGACACCCACTCAGGTTGCAAGTCATGCTCAGAAGTACTTCATTAGGCAGCTTACAGCGGGGAAGGATAAGAGGAGATCAAGTATCCATGATATCACCATGGTCAATCTGCCAGAAGCAAATTCTCCTTCATCAGAGAGTAACATAACTAATTCTTCTTCTCCAGATCGCTCAGTGAAGGTTGCGAATCCACTGCAGAATCAGAAATTGTCTAGCAAGGTTAAACAGGAATATGACTGGAAATCGCCATATGAGGACGAGCCAATGATTTTCAACCCAGCAAGTCGAAACATGATTGTGCGCGCTCCATTGCATGAGATCTCTTCGTATGAATCTAAGCCGCAGGAGCATAATTTACTCAGAGGCACTCTCCATGGCTGCCAGGTTGCACCATATGGTACTATTTTGCAAATGCAGCATCAATGA 927 0.4552 MNWGIEFLSPASYLQDSNWLFQESKGAKWTPQENKLFENALASYDKDTPDRWMRVAAMVPGKTVGDVIKQYRELEEDVCVIEAGLIPVPGYNSTSSFTLDWVNNQGFDGFKQFCSIGGKRGASTRPSEHERKKGVPWTEEEHRQFLLGLNKYGKGDWRNISRSFVTTRTPTQVASHAQKYFIRQLTAGKDKRRSSIHDITMVNLPEANSPSSESNITNSSSPDRSVKVANPLQNQKLSSKVKQEYDWKSPYEDEPMIFNPASRNMIVRAPLHEISSYESKPQEHNLLRGTLHGCQVAPYGTILQMQHQ* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1165 308 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 132 184 IPR006447 GO:0003677
Dod01g1165 308 Pfam Myb-like DNA-binding domain 136 181 IPR001005 -
Dod01g1165 308 Pfam Myb-like DNA-binding domain 28 73 IPR001005 -
Dod01g1165 308 ProSiteProfiles SANT domain profile. 137 185 IPR017884 -
Dod01g1165 308 SUPERFAMILY Homeodomain-like 131 184 IPR009057 -
Dod01g1165 308 MobiDBLite consensus disorder prediction 201 241 - -
Dod01g1165 308 CDD SANT 28 74 IPR001005 -
Dod01g1165 308 Gene3D - 135 186 - -
Dod01g1165 308 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 234 IPR043363 -
Dod01g1165 308 MobiDBLite consensus disorder prediction 123 137 - -
Dod01g1165 308 ProSiteProfiles Myb-like domain profile. 129 181 IPR001005 -
Dod01g1165 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 185 IPR017930 -
Dod01g1165 308 SMART sant 133 183 IPR001005 -
Dod01g1165 308 SMART sant 25 77 IPR001005 -
Dod01g1165 308 SUPERFAMILY Homeodomain-like 28 82 IPR009057 -
Dod01g1165 308 MobiDBLite consensus disorder prediction 201 240 - -
Dod01g1165 308 MobiDBLite consensus disorder prediction 118 137 - -
Dod01g1165 308 CDD SANT 136 181 IPR001005 -
Dod01g1165 308 Gene3D - 21 88 - -
Dod01g1165 308 PANTHER TRANSCRIPTION FACTOR DIVARICATA 1 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1165 Dod-Chr1 23761682 23763419 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod01g1165 Myb_DNA-binding 7.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1165 - - var:108329798 469.159