Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1148 ATGTTGAAGTTAGGCTCAAATGAACTTTCTGGGCTAATACCACCTGCAGTAGGCAGATTAGTCAATGTGGAATATGTTTCCCTTATAAGAAATAGATTATATGGATCAATTCCTTCCTTTATTGGAAACTTGACCAATTTAAATAATCTGCAATTAGGTCATAATAATTTCATAGGTTATTTGCCTCACAACATTTGTAAGAATGGAAAGCTTGAGAACATAAGCATTGCAGATAACCAAATCATAGGCCCAGTTCCAAAGAGCTTGAAGAACTGCACCAGCCTGAAAAGAGTTAGGCTTGATGGAAACCAAATGACAGGAAATATAACAGAAGATTTTGGTGTATATCCTAGTTTGGATTACATCGATTTGAGTGACAATAACTTTTATGGCTACCTTTCGCCAAACTGGGGGAAATGCTACAACCTGTCAAGCCTCAAGATCTCCAACAACAATTTATCTGGCAGCATACCACCGGAATTGGGTGAGGCAACTAACTTACAAGTTCTCGACCTTTCTTCAAACCATCTTACAGGAGAACTTCCAATGGACCTAAGCAACTTGACTTCATTGATCGAGTTGCTGATAAGCAGCAATCATCTTTCAGGAAATTTTCCCATACAAATTGCTTCATTGCATAAACTTGAACAGTTGGATCTTGCTGCAAATAATTTTAGTGGCTTCCTCACCGAACAACTTGGAAGGCTGCCTAAGTTATGGAACTTGAATTTGAGCCAAAATACGTTTGTGGGAAATATTCCTATTGAGTTTGGTCAATTAACAGCTCTTCGAAGCCTTGATCTTAGTGAGAATTTATTGGATGGAACAATACCGGCAACACTTGGAGAGTTGAAATACTTGGAAACATTGAATCTGTCGCAAAACAAGCTTTCTGGTGTCATTCCCTCTAGTTTTGATGAAATGTTAAGCTTGACAAATGTCGATATATCATACAACCATTTAGAAGGTCCACTTCCAAACATTCCGGCCTTTAGAAAAGCTCCAATTGAAGCACTAATAAACAATAAAGGTTTGTGTGGTAATGTCACTGGTATGGAACCTTGCACAATGTCAAGTAGCAAATCTCATCACCATAAGGCTAAGAAAGTTTTACATCTAGTTTTACCGCTTACATTGGGCGTTGTAATACTAGCACTCTTTGCCTTAGGAACTTTTGGTTATGTTGCTCCAGAACTTGCCTACACTATGGAAGTTAATGAGAAATGTGATGTTTATAGCTTTGGAATATTGGCCTTGGAAATACTTTTAGGAAAACATCCTAGAAATGTTACATCATCTACAATGTCATATTCTTCTGAAACAATGGTACTGGTATCAACACTTGATAATTCCCCATTGAAGGATAAGTTGGATCAACGAATTCCTCATCCTACATATTCAATTGCTGAGGAAGTGACATTGATTGTAAGGATAGCATGCGCATGCTTGAGTGAGAATCCACGTTCTCGCCCTACCATGGAGCAAGTGACCAAGAAACTTGCAATGCCCAATTCAGCTCATTTAATGGATTAG 1533 0.3816 MLKLGSNELSGLIPPAVGRLVNVEYVSLIRNRLYGSIPSFIGNLTNLNNLQLGHNNFIGYLPHNICKNGKLENISIADNQIIGPVPKSLKNCTSLKRVRLDGNQMTGNITEDFGVYPSLDYIDLSDNNFYGYLSPNWGKCYNLSSLKISNNNLSGSIPPELGEATNLQVLDLSSNHLTGELPMDLSNLTSLIELLISSNHLSGNFPIQIASLHKLEQLDLAANNFSGFLTEQLGRLPKLWNLNLSQNTFVGNIPIEFGQLTALRSLDLSENLLDGTIPATLGELKYLETLNLSQNKLSGVIPSSFDEMLSLTNVDISYNHLEGPLPNIPAFRKAPIEALINNKGLCGNVTGMEPCTMSSSKSHHHKAKKVLHLVLPLTLGVVILALFALGTFGYVAPELAYTMEVNEKCDVYSFGILALEILLGKHPRNVTSSTMSYSSETMVLVSTLDNSPLKDKLDQRIPHPTYSIAEEVTLIVRIACACLSENPRSRPTMEQVTKKLAMPNSAHLMD* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1148 510 ProSiteProfiles Leucine-rich repeat profile. 166 189 IPR001611 GO:0005515
Dod01g1148 510 SMART LRR_typ_2 165 188 IPR003591 -
Dod01g1148 510 SMART LRR_typ_2 212 236 IPR003591 -
Dod01g1148 510 SMART LRR_typ_2 260 283 IPR003591 -
Dod01g1148 510 SMART LRR_typ_2 284 307 IPR003591 -
Dod01g1148 510 SMART LRR_typ_2 44 68 IPR003591 -
Dod01g1148 510 SUPERFAMILY RNI-like 2 323 - -
Dod01g1148 510 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 2 389 - -
Dod01g1148 510 ProSiteProfiles Protein kinase domain profile. 95 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g1148 510 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 390 505 - -
Dod01g1148 510 PRINTS Leucine-rich repeat signature 167 180 - -
Dod01g1148 510 PRINTS Leucine-rich repeat signature 284 297 - -
Dod01g1148 510 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 2 389 - -
Dod01g1148 510 Pfam Leucine Rich Repeat 166 188 IPR001611 GO:0005515
Dod01g1148 510 Gene3D Transferase(Phosphotransferase) domain 1 358 507 - -
Dod01g1148 510 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 390 505 - -
Dod01g1148 510 SUPERFAMILY Protein kinase-like (PK-like) 384 500 IPR011009 -
Dod01g1148 510 Pfam Leucine rich repeat 262 321 IPR001611 GO:0005515
Dod01g1148 510 Pfam Protein kinase domain 389 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g1148 510 Gene3D Ribonuclease Inhibitor 1 357 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1148 Dod-Chr1 23275150 23277586 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1148 2 415 Receptor kinase-like Gene Family AT4G08850 45.084 5.61e-112 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dod01g1148 Pkinase 7.1e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1148 - - mtr:MTR_1g040615 479.944