Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1115 ATGACATCCGGAAAAGGCAAGGGGGCAGCGAGGAACTCGAAGGAAGCATTGAAGCCCGTCGATGACCGAAAGGTAGGAAAGCGAAAAGCTGCTTACAAGCCTGAGAGGAGTAGTGCAAAGAAGTCAAAGAAGGCCAAGAAAGATCCCAACAAACCGAAAAGGCCGCCCAGTGCTTTCTTTGTGTTCCTTGAGGAGTTCAGAAAGACATTCAAGGAGGAAAATCCTGGTGTGAAGGCTGTATCAGCTGTTGGGAAAGCTGGAGGACAAAAATGGAAATCCTTGACTCAAGCTGAGAAAGCTCCATATGAAGCCAAGGCTGCAAGAAGGAAGACTGACTATGAAAAACTAATGAATGCTTATAATAAAAAGCAGGCAAGTTCAGCAGATGATGGAGATGATGAGTCAGACAAGTCAAAATCTGAAGTGAATGATGAAGATGATGAAGCCAGCGGGGAGGAGGGCCACCACGAGGAGGATGAGGACGACGAGGAAGAAGAGGATGACGAAGATGATGACTGA 519 0.4701 MTSGKGKGAARNSKEALKPVDDRKVGKRKAAYKPERSSAKKSKKAKKDPNKPKRPPSAFFVFLEEFRKTFKEENPGVKAVSAVGKAGGQKWKSLTQAEKAPYEAKAARRKTDYEKLMNAYNKKQASSADDGDDESDKSKSEVNDEDDEASGEEGHHEEDEDDEEEEDDEDDD* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1115 172 MobiDBLite consensus disorder prediction 1 57 - -
Dod01g1115 172 MobiDBLite consensus disorder prediction 102 117 - -
Dod01g1115 172 Gene3D High mobility group box domain 35 137 IPR036910 -
Dod01g1115 172 MobiDBLite consensus disorder prediction 11 42 - -
Dod01g1115 172 MobiDBLite consensus disorder prediction 84 172 - -
Dod01g1115 172 MobiDBLite consensus disorder prediction 145 172 - -
Dod01g1115 172 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 163 IPR031061 -
Dod01g1115 172 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 52 121 IPR009071 -
Dod01g1115 172 MobiDBLite consensus disorder prediction 126 144 - -
Dod01g1115 172 Pfam HMG (high mobility group) box 52 121 IPR009071 -
Dod01g1115 172 SUPERFAMILY HMG-box 39 125 IPR036910 -
Dod01g1115 172 CDD HMGB-UBF_HMG-box 52 117 - -
Dod01g1115 172 SMART hmgende2 51 122 IPR009071 -
Dod01g1115 172 PANTHER HIGH MOBILITY GROUP B PROTEIN 1 1 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1115 Dod-Chr1 22006595 22008695 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Dod01g1115 HMG_box 1.4e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1115 K25507 - egr:104419103 199.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1115 01 22006595 22008695 Dod01g1115 01 22006595 22008695 ECH