Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1113 ATGGGGTTTGGTTTCAAAAGAAGGAAGAAGGAACAAGAAGGACAAGAAGAAGAAGGAAGAGGAGGAGAGATGCGTAGGTCTTTCAAGGATTCACTCAAAGCTCTTGAAGCTGACATCCAGTTTGCCAATACACTAGCTTCTGAATATCCAAGTGGTCGTGATGGTTCTTGCCTCCAAATGAGGTTGTCCTACAGTCCAGCTGCTCAATTTTTCCTTTTTCTTGTTCAATGGTCTGATTGTCACCTTGCTGGAGCCTTGGGATTGCTTAGGATTCTTATATACAAGGCATATGCGGATGGTAAGACAACCATGTCCATTTATGAAAGAAAAGCCAGCCTGAAGGAGTTCTATCGTCTGGTCTTTCCCTCTTTGTTGCAACTCAACAGAGGAATCACTGAAGTTGAAGACAGGAAACAAAAGCATACATGCGCTACTAAGTACAAGCCAATAGACATAACAAGTGAGGGAAAACTCTCTGAAATTGACATGGAGAGAGAAGAAGAATGTAGTATTTGCATGGAGATGAACGACAAGGTTGTATTGCCGAATTGCAATCATTCAATGTGTATGAAATGCTACCGAGACTGGCATGCAAGATCTCAATCTTGCCCTTTCTGTCGAGACAGTCTTAAAAGAGTGAACTCTGGTGACCTTTGGATCTACATGAACAGCCGTGAGATAGATGATTTGGCTTCAATCAACAAGGAGAATTTGAGAAGGCTATTCATGTACATAGAAAAGTTGCCCCTCGTTGTGCCAGATCCTATATACGCATCGTATCGTCACCGCTGGTGA 795 0.4264 MGFGFKRRKKEQEGQEEEGRGGEMRRSFKDSLKALEADIQFANTLASEYPSGRDGSCLQMRLSYSPAAQFFLFLVQWSDCHLAGALGLLRILIYKAYADGKTTMSIYERKASLKEFYRLVFPSLLQLNRGITEVEDRKQKHTCATKYKPIDITSEGKLSEIDMEREEECSICMEMNDKVVLPNCNHSMCMKCYRDWHARSQSCPFCRDSLKRVNSGDLWIYMNSREIDDLASINKENLRRLFMYIEKLPLVVPDPIYASYRHRW* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1113 264 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 18 252 - -
Dod01g1113 264 Pfam Zinc finger, C3HC4 type (RING finger) 166 212 - -
Dod01g1113 264 MobiDBLite consensus disorder prediction 1 26 - -
Dod01g1113 264 ProSiteProfiles Zinc finger RING-type profile. 169 207 IPR001841 -
Dod01g1113 264 ProSitePatterns Zinc finger RING-type signature. 184 193 IPR017907 -
Dod01g1113 264 PANTHER RING FINGER PROTEIN 41, 151 18 252 - -
Dod01g1113 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 216 IPR013083 -
Dod01g1113 264 SUPERFAMILY RING/U-box 158 212 - -
Dod01g1113 264 SMART ring_2 169 206 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1113 Dod-Chr1 21984418 21988297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1113 144 210 C3H Transcription Factor Family AT3G10910 40.845 1.40e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1113 K25840 - gmx:100818286 394.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1113 01 21984418 21988297 Dod01g1113 01 21984418 21988297 ECH