Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1100 ATGGCTGAGCCTCATTCAACTGCAGCTACCAACCATCCTTCTTCTTCTGCTTCAGCCGGTAACCGTGAATCTGCCGGAGCTTCAGCGTCGTCTTCCAGCCATTGGCGATCCGGCCACGACGACGAGAACGCCGCTGCACCGTCTCGGAGTTGGTTCCGGTTGCCGGAAGTTGGACCGAGCGTCGTCGCCCATGGAGGAACAATTATCGGTTGGGGATACGGCGGTGAATCGTCTGTTGCTAGGAACGATGACTGCTCCTGCTTCGTCGTCGTATTCACCTTTTGGTTCTTTGTTTCGATGACAATGATACTGGGGGTTTATGGGTCAATGGATCTCGTGCTTAGTCCAGCATCTTCGATTGTGTTCCAACCTAGCCCTCTGTTCGTGCAATCGGTGGTGGTAGAAAACATAGCGGAAAATCCAGGACCCATTCTGTATGGTACATATCAATATCCAGCTCTAGATGATGTTACCACTTGGGAAGAAACTCTTAATGTATCTATTCCCTTTGACTCACATCAGGAATGGAAATATTATCTGAATAGAGGGTCAGAAGTAAATATTTCATATCGCTTGGGCTCTGGGGGCTCCTATATTTTCCTTGTAATTGCAGAAGGGGCTGAGGGCCTCACTCGATGGCTCGAGGACCCAACATATCCTAACACAACTCTCTCATGGAACGTCATCCACGGAACTGGTATGATTACACAGAAGATACTCAAGTCGTCGAGCTATTATGTGGCATTGGGTAATTTGGGTGAGGAGGTGGAGGTGGAACTAAACCTCACAGTGAGGGCCTCCTTGCACAATACCACAAATGCTTTCTACGAATGTGCTGTGACTAGTAGTCCATGCAGTATGACTATTTTCTTTCCGGAAGGAAATTCAGCTATCTTGGTTTCTCCTGGACCACAACGGAACGCGTCCAATGATGAGTGGTATGTCAGACTGTCCTATGGACCTAGATGGGTCACATATATTTTTGGCACAGGTGCATTGACTCTGCTTATGTTTTGGACCTTCAATTTCTTGAACAAGATCCAGTGTGCCCGTGAAGATACAGCAGGAGTTAGACACGAGGGAACAGCACCAGAGGTAGCCCCTTTGCTTCCTCGAAAAGATGATGATCTGTCAAGTTGGGGTTCATCATATGATTCAATGTCACACGATGAGGAGGATCTTGACCTTCTGATTGGAAGTTCCATCGACGGAAAGTCTCTAGCTAATGGTGAAACCAGTAATAATACCCGGCGTCTCTGTGCCATTTGCTTTGATGCTCCAAGGGACTGCTTCTTCCTTCCATGCGGGCACTGTGCTGCTTGTTTCGAATGTGGAACTAGGTTAGCCGAGGCAGCCGGTACTTGCCCTGTTTGTCATAGGAACATGAAAAAAGTGAGGAAGATTTTTACTGTTTGA 1416 0.4774 MAEPHSTAATNHPSSSASAGNRESAGASASSSSHWRSGHDDENAAAPSRSWFRLPEVGPSVVAHGGTIIGWGYGGESSVARNDDCSCFVVVFTFWFFVSMTMILGVYGSMDLVLSPASSIVFQPSPLFVQSVVVENIAENPGPILYGTYQYPALDDVTTWEETLNVSIPFDSHQEWKYYLNRGSEVNISYRLGSGGSYIFLVIAEGAEGLTRWLEDPTYPNTTLSWNVIHGTGMITQKILKSSSYYVALGNLGEEVEVELNLTVRASLHNTTNAFYECAVTSSPCSMTIFFPEGNSAILVSPGPQRNASNDEWYVRLSYGPRWVTYIFGTGALTLLMFWTFNFLNKIQCAREDTAGVRHEGTAPEVAPLLPRKDDDLSSWGSSYDSMSHDEEDLDLLIGSSIDGKSLANGETSNNTRRLCAICFDAPRDCFFLPCGHCAACFECGTRLAEAAGTCPVCHRNMKKVRKIFTV* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1100 471 ProSiteProfiles Zinc finger RING-type profile. 420 459 IPR001841 -
Dod01g1100 471 SUPERFAMILY RING/U-box 419 465 - -
Dod01g1100 471 Pfam Domain of unknown function (DUF4793) 234 339 IPR032010 -
Dod01g1100 471 SMART ring_2 420 458 IPR001841 -
Dod01g1100 471 MobiDBLite consensus disorder prediction 1 43 - -
Dod01g1100 471 MobiDBLite consensus disorder prediction 7 34 - -
Dod01g1100 471 Pfam Domain of unknown function (DUF4792) 142 210 IPR032008 -
Dod01g1100 471 Pfam Zinc finger, C3HC4 type (RING finger) 417 465 - -
Dod01g1100 471 PANTHER E3 UBIQUITIN-PROTEIN LIGASE APD1-RELATED 1 471 - -
Dod01g1100 471 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 404 471 IPR013083 -
Dod01g1100 471 PANTHER OS05G0521000 PROTEIN 1 471 IPR044586 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1100 Dod-Chr1 21720894 21728103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1100 393 468 C3H Transcription Factor Family AT3G06140 28.947 4.94e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1100 - - ahf:112743648 617.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1100 01 21720894 21728103 Dod01g1100 01 21720894 21728103 ECH