Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1090 ATGGCTGATGCAGACACCCATCACAATGGCGCATCAAAGATTCCGGCGCTTGCAACAAACGGTGATGAACCTAATGATGGAGGAGATGATGTGAAATTAAGTTCTAGGGACCAAAGAGATGCTCTCCCAGGTGAACCCAAGTGTATTATATGTGGCCGCTATGGTGAGTATATTTGTGACGAAACTGATGATGATGTTTGCAGTTTGGAATGCAAACAATCGGTACTAAGCAGAATTGCCAGATCCCTGCCTCCTCCCGTCGGAGGTCTTCCACCACCTAAAAAGCTTCCTGCAGCTGATGAGTGCTTTTATGTTAGAGACAGTGATTGGGAATTGGGAACTTCGTCATTGGCTAGAGATCAGGTTGAGTTGCTTAGAAAGAAACTTGATATTCATGTGAAGGGTGATGTAGTTGCGCCAGTTTTGTCATTTGGTTCGTGTAACCTCCCTGACAAGCTCCTCCACAATATAGAAGCAGCAGGATATGACATGCCTACACCTGTCCAGATGCAAGCAATCCCTGCTGCTTTGATGGGCAAAAACATGCTTGTTTTGGCCGATACAGGATCCGGAAAGTCTGCTTCGTTTCTTATTCCGATAGTTTCTCGTTGTGTGAGTCATCGTCTTATGTTTGTTTCAGATAAGAAGCCTTTAGCCATTGTGCTAACACCTACCAGAGAGCTTTGTATTCAGGTTGAAGAGCATGCAAAATTGCTCGGAAAGGGTTTACCTTTTAAAACTGCACTTGTGGTTGGTGGGGACGCCATGGCTGGACAGCTCTACCGCATTCAGCAAGGAGTGGAGTTGATTGTGGGAACACCGGGAAGGCTTGTTGATCTTTTAACGAAGCATGAGATTGACTTAGATAATGTGATGACTTTTGTTGTGGATGAAGTGGACTGCATGCTGCGAAGGGGTTTCAGAGATCAGGTCATGCAGATATACAGGGCTCTCTCACAACCTCAAGTCTTGATGTATTCTGCAACAATGTCAAATGATTTAGAGAAGATGGCAAACTCTCTGGCAAATGTTACTGTGGTTATCTCTGTTGGGAAACTGAATAGCCCAAATAAGGCTGTGAAACAGGTAGCTATTTGGGTCGAGTCAAAGCAAAAGAAGCAGAAGCTGTTTGACATATTGGTGAGTAAGCAACATTTTAAGCCACCTGTTGTAATATATGTGAGCTCCAGACTTGGAGCAGATCTCCTGGCAAATGCGATTACAGTTTCCACAGGAATTAAAGCGAATTCAATTCATGGAGAGAAGTCTATGAAGGAAAGGAGAGAAATAATGCGGTCATTTTTGGTTGGTGAGGTTCCAGTGGTTGTGGCTACTGGAGTTTTGGGTAGAGGGGTTGATCTGTTGGGTGTAAGACAGGTAATTGTGTTTGACATGCCCAATTCCATCAAGGAATACATACATCAGATTGGAAGGGCATCTAGAATGGGAGAGGAAGGTCAAGCTATAGTTTTTGTGAATGAGGAGAATAAGAACGTCTTTGCAGATTTAGTTGATGTTTTAAAATCTGGTGGAGCAGCTGTACCTCGGGAGCTTGCCAATTCACGGTATACCACTGGATTTTTCTCTGGTGGCAAGGGTTCAAAGAAGAGAAAGCATAGATGA 1623 0.4399 MADADTHHNGASKIPALATNGDEPNDGGDDVKLSSRDQRDALPGEPKCIICGRYGEYICDETDDDVCSLECKQSVLSRIARSLPPPVGGLPPPKKLPAADECFYVRDSDWELGTSSLARDQVELLRKKLDIHVKGDVVAPVLSFGSCNLPDKLLHNIEAAGYDMPTPVQMQAIPAALMGKNMLVLADTGSGKSASFLIPIVSRCVSHRLMFVSDKKPLAIVLTPTRELCIQVEEHAKLLGKGLPFKTALVVGGDAMAGQLYRIQQGVELIVGTPGRLVDLLTKHEIDLDNVMTFVVDEVDCMLRRGFRDQVMQIYRALSQPQVLMYSATMSNDLEKMANSLANVTVVISVGKLNSPNKAVKQVAIWVESKQKKQKLFDILVSKQHFKPPVVIYVSSRLGADLLANAITVSTGIKANSIHGEKSMKERREIMRSFLVGEVPVVVATGVLGRGVDLLGVRQVIVFDMPNSIKEYIHQIGRASRMGEEGQAIVFVNEENKNVFADLVDVLKSGGAAVPRELANSRYTTGFFSGGKGSKKRKHR* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1090 540 Gene3D - 350 524 IPR027417 -
Dod01g1090 540 SMART helicmild6 401 483 IPR001650 -
Dod01g1090 540 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 359 522 IPR001650 -
Dod01g1090 540 MobiDBLite consensus disorder prediction 1 38 - -
Dod01g1090 540 Pfam DEAD/DEAH box helicase 166 336 IPR011545 GO:0003676|GO:0005524
Dod01g1090 540 Gene3D - 111 349 IPR027417 -
Dod01g1090 540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 288 497 IPR027417 -
Dod01g1090 540 SMART ultradead3 161 363 IPR014001 -
Dod01g1090 540 Pfam Helicase conserved C-terminal domain 372 483 IPR001650 -
Dod01g1090 540 Pfam HIT zinc finger 46 72 IPR007529 -
Dod01g1090 540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 349 IPR027417 -
Dod01g1090 540 CDD SF2_C_DEAD 360 492 - -
Dod01g1090 540 Gene3D - 27 83 - -
Dod01g1090 540 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 173 348 IPR014001 -
Dod01g1090 540 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 142 170 IPR014014 GO:0003724
Dod01g1090 540 PANTHER ATP-DEPENDENT RNA HELICASE DDX59-RELATED 29 525 - -
Dod01g1090 540 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 29 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1090 Dod-Chr1 21486509 21489896 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1090 143 503 Eukaryotic Initiation Factors Gene Family AT1G72730 33.333 3.28e-55 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1090 K19466 - gmx:100781473 841.647