Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1056 ATGGAGTGCATTCCTTCTTGTAACCCTACCTCTTCTGCAGGGTCGTCATCATCATCATCTTCCAAGGCAAAAAAGATGAGCAAGGAGGGAAAGGGTGCAGCAGAAGTGGAGAAAAGCAAGAAGGGAGTGATGAAGCTTTCCGCTGACCCACAAAGCGTGGCAGCAAGAGAAAGAAGGCACAGAATCAGTGACAGGTTCAAGATCCTTCAGAGCATGGTCCCTGGTGGGAGCAAGATGGACACTGCTTCTATGTTGGAGGAAGCCATTAACTACGTCAGGTTCCTCCAGACCCAAATTTGGCTTCACCAAACCATGATAAATTTTGTACATGACGAGTCATCAATGTTCCTTCCTCATCAAGATTATTTTCCTTATGAGCAGATCTTTTCCCTTCAGAAAAACACTTCAGTTTCTTTCGATGATTCTCTGCAGACTTTACCACAGCTACCACTTGACCAGTGGTACTTCCAAGGTGAAGAATATACCACCTTTGATGCCAATATGAAATACTGGCCAGCTTAA 522 0.4483 MECIPSCNPTSSAGSSSSSSSKAKKMSKEGKGAAEVEKSKKGVMKLSADPQSVAARERRHRISDRFKILQSMVPGGSKMDTASMLEEAINYVRFLQTQIWLHQTMINFVHDESSMFLPHQDYFPYEQIFSLQKNTSVSFDDSLQTLPQLPLDQWYFQGEEYTTFDANMKYWPA* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1056 173 MobiDBLite consensus disorder prediction 1 57 - -
Dod01g1056 173 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 108 IPR036638 GO:0046983
Dod01g1056 173 Pfam Helix-loop-helix DNA-binding domain 56 96 IPR011598 GO:0046983
Dod01g1056 173 PANTHER TRANSCRIPTION FACTOR LAX PANICLE 1 20 135 - -
Dod01g1056 173 CDD bHLH_AtIND_like 47 106 - -
Dod01g1056 173 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 20 135 IPR045843 GO:0003700|GO:0006355
Dod01g1056 173 SMART finulus 52 101 IPR011598 GO:0046983
Dod01g1056 173 Gene3D - 49 113 IPR036638 GO:0046983
Dod01g1056 173 MobiDBLite consensus disorder prediction 1 23 - -
Dod01g1056 173 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
Dod01g1056 173 MobiDBLite consensus disorder prediction 24 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1056 Dod-Chr1 20883977 20884554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1056 32 126 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 46.602 5.55e-25 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod01g1056 HLH 9.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1056 - - gmx:113001230 166.007