Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1054 ATGGCGGCTCCGGCATACCAAGAGCACCTACCAGCAGCACCCAATTGGCTAAACAAAGGGGACAACGCATGGCAGATGACAGCAGCAACGCTTGTTGGGCTTCAAAGCATGCCAGGCCTTGTGATCCTCTATGCAAGCATAGTCAAGAAGAAATGGGCAGTGAACTCTGCCTTCATGGCACTCTATGCCTTTGCAGCAGTTCTAATATGTTGGGTCCTTTTGTGTTTCCGAATGGCCTTTGGGGACAAACTACTTCCCTTTTGGGGGAAAGGTGCACCGGCACTAGGCCAGAAGTACCTTATTAGGCAAGCCAAGGTCCCTGAGACAACACACCACTACAACAATGGCACTGTTGAGACACCAGCAGAGGAACCCCTTTTTCCTATGGCTTCACTTGTGTATTTCCAGTTCACTTTTGCTGCTATTACCATGATCCTGCTTGCTGGGTCTGTGCTTGGAAGGATGAACATCAAGGCTTGGATGGCTTTTGTGCCACTTTGGCTCATCTTTTCCTACACTGTTGGTGCCTTCAGTCTCTGGGGTGGTGGGTTTCTCTACCAATGGGGTGTTATTGATTACTCTGGTGGTTATGTCATCCACCTCTCCTCTGGAATCGCTGGCTTCACTGCTGCTTACTGGGTTGGACCGAGGGTGAAGAGTGATAGGGAGAGGTTCCCACCAAACAACGTGCTGCTGATGCTTGCGGGTGCAGGGTTGCTGTGGATGGGGTGGTCAGGGTTCAATGGTGGAGCACCCTACGCAGCAAACACTGCTTCCCCTATTGCTGTGTTGAACACAAACATATGTGCAGCCACCAGCCTCCTTGTGTGGACTACCCTCGATGTTGCCTTCTTTGGGAAACCCTCTGTGATTGGAGCCGTACAGGGCATGATGACAGGACTTGTGTGCATCACTCCAGGAGCAGGGCTTGTGCAATCGTGGGCGGCTATAGTAATGGGAATTCTATCTGGAAGCATTCCGTGGGTGTCTATGATGATTCTGCACAAAAAGTCAAGCCTTCTGCAGAAGGTGGATGACACCCTTGGTGTATTTCACACACATGCTGTAGCTGGCCTTTTGGGTGGCCTCCTAACAGGTCTCTTAGCAGAACCAGCCCTTTGCAGAATCCTATTGCCAGTGACTAACTCAAGGGGTGCATTCTATGGTGGAAGTGGTGGTGTGCAATTCCTAAAGCAATTGGTGGCAGCCATGTTTGTTATTGCGTGGAACTTGGTCTCCACCACCATCATTCTTCTTGTCATACAATTGTTCATACCCTTGAGGATGCCGGATGAGGAGCTTGAAATTGGTGATGATGCTGCCCATGGTGAGGAAGCTTATGCCCTTTGGGGTGATGGGGAAAAATATGACCCAACAAGGCATGGTACCCAAAACACTGGCAACTCTGGAGTATCACCTTATGTTAATGGTGCAAGAGGTGTCACCATAAATTTATGA 1458 0.4986 MAAPAYQEHLPAAPNWLNKGDNAWQMTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLLCFRMAFGDKLLPFWGKGAPALGQKYLIRQAKVPETTHHYNNGTVETPAEEPLFPMASLVYFQFTFAAITMILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRVKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAANTASPIAVLNTNICAATSLLVWTTLDVAFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVSMMILHKKSSLLQKVDDTLGVFHTHAVAGLLGGLLTGLLAEPALCRILLPVTNSRGAFYGGSGGVQFLKQLVAAMFVIAWNLVSTTIILLVIQLFIPLRMPDEELEIGDDAAHGEEAYALWGDGEKYDPTRHGTQNTGNSGVSPYVNGARGVTINL* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1054 485 PANTHER AMMONIUM TRANSPORTER 2 482 - -
Dod01g1054 485 PRINTS Rhesus blood group protein signature 231 249 IPR002229 GO:0005887
Dod01g1054 485 PRINTS Rhesus blood group protein signature 262 284 IPR002229 GO:0005887
Dod01g1054 485 PRINTS Rhesus blood group protein signature 355 371 IPR002229 GO:0005887
Dod01g1054 485 PRINTS Rhesus blood group protein signature 136 152 IPR002229 GO:0005887
Dod01g1054 485 PRINTS Rhesus blood group protein signature 317 335 IPR002229 GO:0005887
Dod01g1054 485 TIGRFAM amt: ammonium transporter 21 447 IPR001905 GO:0008519|GO:0016020|GO:0072488
Dod01g1054 485 Pfam Ammonium Transporter Family 23 447 IPR024041 GO:0008519|GO:0016020|GO:0072488
Dod01g1054 485 ProSitePatterns Ammonium transporters signature. 192 217 IPR018047 GO:0008519|GO:0016020|GO:0072488
Dod01g1054 485 Gene3D Ammonium transporter AmtB like domains 3 450 IPR029020 -
Dod01g1054 485 PANTHER AMMONIUM TRANSPORTER MEP2 2 482 IPR001905 GO:0008519|GO:0016020|GO:0072488
Dod01g1054 485 SUPERFAMILY Ammonium transporter 16 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1054 Dod-Chr1 20849672 20854372 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1054 129 485 Inorganic Solute Cotransporters AT2G38290 78.273 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1054 K03320 - gmx:100790119 891.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1054 01 20849672 20854372 Dod01g1054 01 20849672 20854372 ECH