Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1050 ATGATGCAGCCTGAGATTCTTCAGTCCCCATGGTCATCGCTCTATGAAGATATGATGAGCTCAACTTTTGATCAAGTTCTTGATGAGCCATATGGCTTCAACATGGATGATGACCATGTTGGTGATTGTGGATTCAGTGCCATATTCAACACTCCCGAGAACACTTCTTCTGCTTCTTCTTATGAAGTATGCTCCATCCCTTTTCCTTCCTCCACCATGTCCACCAATGATCATATGCATATCCCATACACAATTGATGAAGAAACCCTTCAACTCCCTTCATTGATGGATGATTTCCCAATGGAATTGGATGATGATATTGGTTCCATCATGAGTGCCCAAGTTGTTGGCATTCATGGCCTTGGATACCCTCAAGAAGAAAGCGAAGGGAGCTTCCCTTCACAAAATTGGTGTAGTGAAGTAGAAGAATATGCATGGAGTCCTACCCCATCAATGAAATCAGAGTTGTCCTCAATTCAACAATCATTTATCATCCCACCAGAAAACAAGGAAATTGAGAACCAAGTGATCCTTCCCATCTTGCTTAAGGCCTGTGGAGAAGCCATGGAGCAAGGGCATAAGCCACTGGCTGAAGAGATCTTGAGGTGCATGAGCCATAAAGTTAGCCCTCATGGTGAACCTCTTGAGCGGCTTGTGTATTACTTGTCACAGGACATGACAAACCATGGGGACTATCTCAAAGGGGAGGCCTTGAAGAACTTTGAGGCTGCTTTGAGGGCTTTCTATCAAGGGACCCCATATGGAAAATTTGCTCACTTTGCAGCTATTTCTGCAATTCTTGCAGCCATACCAGAAGATTGTGATGCCATACACATAGTGGACTCTTATATGGGACTAGGGGTTCAATGGATTCCAATGATTGAGGCCATTGCACACCTGAACAAAACACTGAAATTGACATCAATCAAAAGGGGTGATGAAAGCCCTGAAAGTACTTCAATTCCTTGGAATTTTGAGGAAACCAAAAGGCAACTCTATGAGCAAGCTAGATCCTGTGGTTTGAAGCTAAAGGTGGAGGAAAAGGAGGTGGAAGAACTGGTTTCTGAGCTTAAGAAAATGAACAAAAGGGGTGGAAGGAAAGTGTTTTTGGCCTTCAATTGCATGGTGGGTCTACCACATATGGGGAGGGTAAGAAGCAGAAGAGAAGCCATGGACTTTTTAAGATTAGCCAAGGGTTTGGTCAACAGCTCTGGCAACAAGGGAATCATCACTTTTGGTGATGGGGATGCATCTGAGAAATTGAAGAACAGCTTGGATTTCTGGCCATTCTTTGAAGGACACTTGGTGCATTACCATGCCTTGTTGGAATCAGTTGAGTCACATTTCCCAATCAATTTCTCAGAAGCAAGAACGGCCATGGAGTGCCTATTTGTGGCACCTAATGTCTCACCTTTTGCTGCTTGGTTAGGAAAATTGGAGGAGATGAAAAGGGATTGCCACCTTCAATGGGAAATTGGCATGGATGGTTGCAAATTGAGCAAAAATATTTTAGAAGAAGTGAGTGAAATGTTGGGAGGAACTGAAGGTTCATATCAGGTCAGGATTGAAGGACAAAATGACAATGAACTGGTTTTGGAATGGAAAACAACAGAACTAGTGAGAGTTTCAGCTTGGAGAAATTAA 1644 0.4319 MMQPEILQSPWSSLYEDMMSSTFDQVLDEPYGFNMDDDHVGDCGFSAIFNTPENTSSASSYEVCSIPFPSSTMSTNDHMHIPYTIDEETLQLPSLMDDFPMELDDDIGSIMSAQVVGIHGLGYPQEESEGSFPSQNWCSEVEEYAWSPTPSMKSELSSIQQSFIIPPENKEIENQVILPILLKACGEAMEQGHKPLAEEILRCMSHKVSPHGEPLERLVYYLSQDMTNHGDYLKGEALKNFEAALRAFYQGTPYGKFAHFAAISAILAAIPEDCDAIHIVDSYMGLGVQWIPMIEAIAHLNKTLKLTSIKRGDESPESTSIPWNFEETKRQLYEQARSCGLKLKVEEKEVEELVSELKKMNKRGGRKVFLAFNCMVGLPHMGRVRSRREAMDFLRLAKGLVNSSGNKGIITFGDGDASEKLKNSLDFWPFFEGHLVHYHALLESVESHFPINFSEARTAMECLFVAPNVSPFAAWLGKLEEMKRDCHLQWEIGMDGCKLSKNILEEVSEMLGGTEGSYQVRIEGQNDNELVLEWKTTELVRVSAWRN* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1050 547 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 14 546 - -
Dod01g1050 547 Pfam GRAS domain family 181 546 IPR005202 -
Dod01g1050 547 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 14 546 IPR005202 -
Dod01g1050 547 Coils Coil 343 363 - -
Dod01g1050 547 ProSiteProfiles GRAS family profile. 169 546 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1050 Dod-Chr1 20762760 20764403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1050 173 546 GRAS Transcription Factor Family AT3G03450 23.529 1.87e-15 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dod01g1050 GRAS 8.8e-39 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1050 - - gmx:100784347 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1050 01 20762760 20764403 Dod01g1050 01 20762760 20764403 ECH