Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1046 ATGGCACCTCGACGATCCTCCTTAAAGCCGTTGCATTGGAGTAAGCCTCTCCGACTCGAAATCAAGCGAAAGCTTGCACAAAGATCAGAAAGAGTAAAATCTGTGGATCTGCATCCGACAGAGCCATGGATTCTGGCAAGTTTATACTCAGGAACTGTCTGTATTTGGAACTACCAATCTCAGGTTCTAGCTGAAAGATCACCTGGACTTCTTGATTTTCACTTGGACCTTGTTAGCCTAGAAGCTGCCACTAAGTCACTCTCTGAGAAGGCGACAAATGGCAACCGCATATTACTCAAGATCACAGGATTTGGGAACAACCTCAAGGAGCTTCAAGAAACTGAGTCTAGATTGGTCAGTTTCTCAAAGGGTTTTGGTAACCTTGTGTTTGAGTTCCAAGGGTTGCTAAGGGGTTCAAGGATCATGAACCTAAGGAAAAAGAAGAATGAAACCGTGGCTGTGAACCTTGTTTCCTATTTGAACACTTTGAGGAGTTTCATGAAGATATTTGACACATTGGGATTTGTTCATTCTCTCAACCCTTCCGTAGTGGTGTTGGTGAAACAAGAAGGTAGCAGGAGCATTAGGACCTTCTTGTCAAGGTTCACAGAGTCTTTGCACTATTTTGCAGCCATGTTTGATTCACTGGATGACTGCCTTCCACTTGAGAGCACCAAGAGGCTCACGATTGAGAAGAAGCTTGGAATCGTGGATTGTCCAAATATGAGAGGATGGAAGCATGGAAAGCAAGAATGGAGAATCATGGGTTTGGTGGAGCAAAGATAA 786 0.4402 MAPRRSSLKPLHWSKPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQVLAERSPGLLDFHLDLVSLEAATKSLSEKATNGNRILLKITGFGNNLKELQETESRLVSFSKGFGNLVFEFQGLLRGSRIMNLRKKKNETVAVNLVSYLNTLRSFMKIFDTLGFVHSLNPSVVVLVKQEGSRSIRTFLSRFTESLHYFAAMFDSLDDCLPLESTKRLTIEKKLGIVDCPNMRGWKHGKQEWRIMGLVEQR* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1046 261 Pfam GRAS domain family 86 234 IPR005202 -
Dod01g1046 261 PANTHER OSJNBA0084A10.13 PROTEIN 85 233 - -
Dod01g1046 261 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 85 233 IPR005202 -
Dod01g1046 261 ProSiteProfiles GRAS family profile. 1 261 IPR005202 -
Dod01g1046 261 Gene3D - 25 85 IPR015943 GO:0005515
Dod01g1046 261 SUPERFAMILY WD40 repeat-like 17 63 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1046 Dod-Chr1 19816161 19819184 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1046 99 255 GRAS Transcription Factor Family AT1G63100 35.673 1.09e-16 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dod01g1046 GRAS 7e-28 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1046 - - gmx:100809458 258.455