Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1028 ATGAAGCCTGATACCGTCTCTGGAAATAGGAAATCACGCAAGAGATGCAGTGAAGCAAGTGATTCAGTGGAACACACACTTGAGAAGTGGAAGGAGTATAACAGGCAACAACAACAACAACAGCTTGGCTCTGGAGGAAATGGGGCGGAAGTGATACACAGGGTTCCTGCAAAGGGGTCCAGAAAAGGGTGCATGAGAGGCAAAGGAGGGCCTCAGAACTCTGATTGCAAGTTCAGAGGTGTAAGGCAGAGGATTTGGGGAAAATGGGTTGCTGAGATTCGCGAGCCGATCAATGGTAAGCTTGTGGGTGAGAAACCAAACAGGCTTTGGCTTGGCACTTTCTCTACTGCACATGAAGCTGCTCTTGCTTATGATGAAGCAGCCAGGGCCATGTATGGCCCTTGTGCCCGTTTGAACTTCCCTCAGTCTCGTGTGGAGTCAGTAGGCTCCAATGGATCATCATCTAGCTGTTCTGCAGATACTTTGATTGTTGGTGAGCTTGCCAGAGCTGAGGGGTTGGAGGGGAATCTTCATCAGCTTCATGAAGACAAAACCAAATTTTCTGAGGTTGGTGGTGTCTTTGAGGAAACAGAAGAGAAACAGGTTGTGTCTCAGGTTTGTTTGGCTCAGGGCTCAGTGGAGACAGGTGAGATTTGTAAGGGAAGAATTCATCAAGGACCTTTAATGAATATAAAGGTTGAAGTTCCTGGAGAGTGTGAAGGAATGGAGGGGCAATTAGAGGAGGTTCTGAAGAACTGCAGCATAGGTGGAGAGGGTAATCACATGCAGAAGGAGCCTATGTTTATGGCCATGAACACAGGAGCTGATTGCAGCTCTTCTGATGCTACTGCACATGGGATTCTGGAAGCAAGTGCTCAAAGAATAGTAATGTTCAGTCACAAAATGAGCAACATACAAACAAACAGTTTCATGAGACTGAAAGCTGAGCTTGGAGGTTTGGACTGCAAGCTGAGAGTCCATTCTAATGATTGCAGGAATGAGGCAGCCATAGTAGGAGGTTCCAATCATTCCATACAGAGTATTCCTATGGTTGCTGGTGGATCAATTGAGAGAATGTCTGAAGTTGGGGATTTGAAGATTAATACTAACAGAGACTCCAAATTGCAAGAGAGAGGAAATAGTGGAAATGCACTATCTGGTTTCAATTCCGGGCAGAGTAGGAAGCTTTCTGATCTTTCTCAACAGTTGCAGAAACTGGGTGGTTGCTTGCCTGAGCATTTGAATAATGTGCAGTTTGCAGACCTGGAAGTGGGTTATGATTATAGTTTCTTAAGTCCTGATTATGATTTTGGCTTATTGGAAGAGAAGAAGTTACTTGATGTATGCTTTTCACATAGAGGGTCTAGTTCCTGA 1374 0.452 MKPDTVSGNRKSRKRCSEASDSVEHTLEKWKEYNRQQQQQQLGSGGNGAEVIHRVPAKGSRKGCMRGKGGPQNSDCKFRGVRQRIWGKWVAEIREPINGKLVGEKPNRLWLGTFSTAHEAALAYDEAARAMYGPCARLNFPQSRVESVGSNGSSSSCSADTLIVGELARAEGLEGNLHQLHEDKTKFSEVGGVFEETEEKQVVSQVCLAQGSVETGEICKGRIHQGPLMNIKVEVPGECEGMEGQLEEVLKNCSIGGEGNHMQKEPMFMAMNTGADCSSSDATAHGILEASAQRIVMFSHKMSNIQTNSFMRLKAELGGLDCKLRVHSNDCRNEAAIVGGSNHSIQSIPMVAGGSIERMSEVGDLKINTNRDSKLQERGNSGNALSGFNSGQSRKLSDLSQQLQKLGGCLPEHLNNVQFADLEVGYDYSFLSPDYDFGLLEEKKLLDVCFSHRGSSS* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1028 457 Gene3D AP2/ERF domain 76 143 IPR036955 GO:0003700|GO:0006355
Dod01g1028 457 MobiDBLite consensus disorder prediction 373 392 - -
Dod01g1028 457 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 315 - -
Dod01g1028 457 MobiDBLite consensus disorder prediction 374 392 - -
Dod01g1028 457 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 315 - -
Dod01g1028 457 SMART rav1_2 77 147 IPR001471 GO:0003700|GO:0006355
Dod01g1028 457 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Dod01g1028 457 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
Dod01g1028 457 SUPERFAMILY DNA-binding domain 77 143 IPR016177 GO:0003677
Dod01g1028 457 MobiDBLite consensus disorder prediction 1 23 - -
Dod01g1028 457 CDD AP2 76 143 IPR001471 GO:0003700|GO:0006355
Dod01g1028 457 ProSiteProfiles AP2/ERF domain profile. 77 141 IPR001471 GO:0003700|GO:0006355
Dod01g1028 457 Pfam AP2 domain 76 133 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1028 Dod-Chr1 19220340 19222361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1028 13 162 AP2-EREBP Transcription Factor Family AT2G40340 53.333 1.22e-43 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod01g1028 AP2 8.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1028 - - cam:101505842 437.187