Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0982 ATGGATGCCCACGAAGCCATGTGGCAAGACATGTTCAGTTCGTTGGTGGATACACTGTACGAACCCCCGCGCCAAATATCTAACTCCCATATTGTTCTTTTGTTTTTCCTAAGCACCAAGTTTCCCTCAAAATGTGACCACTTACTTCCCACTCATTTCGCCACATCTCTCTCCCTCATTGATCTGCAATTGTTCCAACAGTTCCTTCGTCTCAATTTTTCATCAAGATTGTTGGAGATTTTGATGAGAGGCCAAAATGGAATGGCAGATCCTGCTAGCCAAGGGGGTATTGAGCGTGATATTGAGCAGGCACTCATTGCTCTAAAGAAAGGCACTCAGTTAATAAAGTATAGCCGGAAAGCAAAGCCAAAAGTTTGCCCATTCAGACTCTCACTGGATGAAACAACACTGATTTGGCTTTCTCACAAAAAGGAAAGGAATCTGAAATTATCTTCAGTTTTGCGTATTATCCCTGGACAAAGAACTGCTGTCTTTAGAAGATATTTGCAACCTGAAAAGGATTATCTTTCATTTTCACTTGTTTATAATAACGAGGAACGCACACTTGATCTGATATGCAAGGACAAAGCTGAGGCAGAGGTATGGTTTGCAGGCCTTAAGGCATTAATTTCTACTGGGAAGCTTAACAGGCGTACTAGAAGTGAACTATCTGATTTTCAGGATGGTGTTGATTTTATTCCAAATGGTCGTCCTTTTGGTGCAACACTAGAGTTTGCTTCAAGCATTGCTCGTGGTAGGCTTTCTGTCGATTCAAATTATCGAGAACCTTCAGTGTATTCAGCGAGCTCAGATGAGAGGGTAGAGCGTGCAACTATGCAACCAAGGACAAGTATCGGAGATGGTTTTCGTGTTAGTGTGTCGAGTACACCAAGCTGTTCAAGTGGAGGATCGGGACCAGATGACATAGAGTCCCTAGGTGATGTTTATATATGGGGAGAGGTTTGGGCAGATGGAGTTTCACCTGAAGGGTCTGGGAATCAGGGGCCTTTCAAGACTGATGTGCTGATTCCTAGGCCCTTAGAATCAGATATTGTTCTTGATGTTCAACAGATTGCATCCAGTGTCCACCACATTGCTATAGTTACAAGGCAAGGGGAGGTTTTTACTTGGGGAGAGGAATCTGGGGGAAGACTTGGCCATGGAATCGAGAAAGATTTTGGTCGGCCCCATCTTGTTGAGATTCTGGCAATTACTAATGTGGATCTTGTTGCATGTGGGGAGAATCATACATGTGCTGTATCTACATCAGATGATCTTTACTCATGGGGTGATGGTACTTACAATGTTGGACTTCTTGGCCATGGCACGGATGTTAGCCACTGGATACCAAAGAGGGTCAGTGGCCCCTTGGAAGGGCTTCAAGTTATATCTATTGCATGTGGCACTTGGCATTCAGCATTGGCAACTTCCAATGGAAAAGTTTTCACCTTTGGTGATGGAACATTTGGTGTCTTGGGTCATGGAGATAGAGAGAGTGTGTCATATCCAAAGGAGGTACAATTATTAAGTGGATTGAAGACTATTAAGGTTGCATGTGGAGTGTGGCACACTGCAGCTATTGTAGAGGTAATGCTTCAATCTGGCTCAAATGTTTCATCAAGAAAGCTATTCACCTGGGGGGATGGTGACAAATATCGTTTGGGACACGGAAACAAGGAAACATACCTGCAACCAACCTGTGTCTCTGCACTCATTGAATTCAATTTCCACCAGATAGCATGTGGACACACTATGACTGTTGGCCTCACTACATCTGGTCATATCTTTGCCATGGGAGGCACTGAATATGGTCAACTAGGAAATCCCATGTCTGATGGAAAAATGCCTGTGCTAGTACAGGATAAGTTGGTTGGTGAATTTGCTGAAGAAATATCATGTGGATCTCATCATGTTGCTGTCTTGACATCAAGAAGTGAACTCTATACTTGGGGGAGAGGTGCCAATGGAAGATTGGGACATGGAGACATAGAGGATAGAAAAACTCCAACTATGGTGGAAGCCTTTAAAGAAAGACATGTAAAAAATATCTCATGTGGGTCTAACTTTACATCTTGCATATGCATCCATAAATGGGTCTCAGGAGTTGACCAATCTGTTTGCACTGCTTGTAGGCAACCATTTGGTTTCACTAGAAAAAGACACAACTGTTATAATTGTGGCTTGGTGCATTGCCATGGTTGTAGTTCAAAGAAGGCACTGAGAGCAGCATTGGCTCCAACACCTGGAAAACCTCATCGTGTGTGTGATTCTTGTTATACCAAACTTAAATCTGTTGAGGCTGGTTCTATTTCCAATTTTAATAGAAAAACTACTACCCCTCCTCGTAGTTCCATAGATGGAAGGGAAAGATATGGCCCTGGAGGAGTAAGATCTTCAAGAACACTCTTCACTCCTATCACAGATTCAATAAAATACCTTGACATAAGGACTAATAAGCCTCTGAACAAACATGATTATTCTTCCGCTAGCCGAGCTTCTCTAGTTCCATCACTTCTACAATTGAAAGATGTTTCATTTCCAAGTTCAACAGTTTCCATGCAGAATGTTTGGAAGGCTACTATACCTCCAAGTCCACCACCAAGTCCACCACTCAGTTCAAGACCAGCATCCCCATATGCAAGAAGACCAAGCCCGCCCCGTTCGGCCACTCCAGGATTCTCTAGAAGTCTTATTGATAGTTTGAGGAAAACAAATGAGCTTTTAAACCAAGAAGTCTCCAAATTGCAGAATCAAATTCGAATTTCGAAACAGAAGAGTGACATGAAAGATGGGGAAATCCAGAGGCTTCAGGAAAATGTTAAGGAAGCCATCTCAGTGACTACAGAGGAATCTTCTAAGCACAAAGCAACGAAAGAATTCTTCGAGTCCACTGTAGATCAGCTGAAGGAAGTAACTGAGAAGTTGCCACCAGAGATTTCCGAGTGTGAAAATTTGAGAACCATGCTTACTCAAGCTGAAGATTTTCTAAACGAAAGTTCAGAATCTGTGACATCCTCCTTTTTATCAAACTTGGAATCTGAACAACAAAATGCACCTAATACACCTGCCTCGGATATTGGCTCTTCTAAACTACAAGAACACAGTATAGAAGAGAATAGTGAAGCTGCAGCAGTTGACCCATCTCATGATGGGGAAAATGCCCTTCAAGAAAGCAATGAATCATGTTCATCTAATGCTACAACAGCAGTGCCTCGACGAAGCTCTGAACATGATTCAAGATCACTGGGGTCTTCAAGACTGGGGAGAGAAGGAGAAACACAAGTCATTGAACAATTTGAACCTGGCGTTTATGTTACAGTTATAGTAAAGCCCGATGGTAACAAAGCTTTCAAAAGAGTTAGATTCAGTAAGCGAAGGTTCCATGAACAACAGGCAGAAGAATGGTGGAACACAAACAAAGATAGGATACTTAGGAGATATAGTCCACAGGCTACAAATCCTGTAGCTACTGCATCATCTAGCACCCCACCACCTGCTGAAGAAAACATTGAGGCACCACCTTCGTAG 3528 0.4274 MDAHEAMWQDMFSSLVDTLYEPPRQISNSHIVLLFFLSTKFPSKCDHLLPTHFATSLSLIDLQLFQQFLRLNFSSRLLEILMRGQNGMADPASQGGIERDIEQALIALKKGTQLIKYSRKAKPKVCPFRLSLDETTLIWLSHKKERNLKLSSVLRIIPGQRTAVFRRYLQPEKDYLSFSLVYNNEERTLDLICKDKAEAEVWFAGLKALISTGKLNRRTRSELSDFQDGVDFIPNGRPFGATLEFASSIARGRLSVDSNYREPSVYSASSDERVERATMQPRTSIGDGFRVSVSSTPSCSSGGSGPDDIESLGDVYIWGEVWADGVSPEGSGNQGPFKTDVLIPRPLESDIVLDVQQIASSVHHIAIVTRQGEVFTWGEESGGRLGHGIEKDFGRPHLVEILAITNVDLVACGENHTCAVSTSDDLYSWGDGTYNVGLLGHGTDVSHWIPKRVSGPLEGLQVISIACGTWHSALATSNGKVFTFGDGTFGVLGHGDRESVSYPKEVQLLSGLKTIKVACGVWHTAAIVEVMLQSGSNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIEFNFHQIACGHTMTVGLTTSGHIFAMGGTEYGQLGNPMSDGKMPVLVQDKLVGEFAEEISCGSHHVAVLTSRSELYTWGRGANGRLGHGDIEDRKTPTMVEAFKERHVKNISCGSNFTSCICIHKWVSGVDQSVCTACRQPFGFTRKRHNCYNCGLVHCHGCSSKKALRAALAPTPGKPHRVCDSCYTKLKSVEAGSISNFNRKTTTPPRSSIDGRERYGPGGVRSSRTLFTPITDSIKYLDIRTNKPLNKHDYSSASRASLVPSLLQLKDVSFPSSTVSMQNVWKATIPPSPPPSPPLSSRPASPYARRPSPPRSATPGFSRSLIDSLRKTNELLNQEVSKLQNQIRISKQKSDMKDGEIQRLQENVKEAISVTTEESSKHKATKEFFESTVDQLKEVTEKLPPEISECENLRTMLTQAEDFLNESSESVTSSFLSNLESEQQNAPNTPASDIGSSKLQEHSIEENSEAAAVDPSHDGENALQESNESCSSNATTAVPRRSSEHDSRSLGSSRLGREGETQVIEQFEPGVYVTVIVKPDGNKAFKRVRFSKRRFHEQQAEEWWNTNKDRILRRYSPQATNPVATASSSTPPPAEENIEAPPS* 1176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0982 1175 MobiDBLite consensus disorder prediction 1006 1030 - -
Dod01g0982 1175 PRINTS Chromosome condensation regulator RCC1 signature 582 600 IPR000408 -
Dod01g0982 1175 PRINTS Chromosome condensation regulator RCC1 signature 465 481 IPR000408 -
Dod01g0982 1175 PRINTS Chromosome condensation regulator RCC1 signature 640 661 IPR000408 -
Dod01g0982 1175 PRINTS Chromosome condensation regulator RCC1 signature 424 440 IPR000408 -
Dod01g0982 1175 PRINTS Chromosome condensation regulator RCC1 signature 481 495 IPR000408 -
Dod01g0982 1175 PRINTS Chromosome condensation regulator RCC1 signature 374 390 IPR000408 -
Dod01g0982 1175 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 424 478 IPR000408 -
Dod01g0982 1175 CDD PH_PLC_plant-like 99 211 - -
Dod01g0982 1175 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 100 1154 - -
Dod01g0982 1175 Pfam Regulator of chromosome condensation (RCC1) repeat 478 527 IPR000408 -
Dod01g0982 1175 Pfam Regulator of chromosome condensation (RCC1) repeat 646 693 IPR000408 -
Dod01g0982 1175 Pfam Regulator of chromosome condensation (RCC1) repeat 543 587 IPR000408 -
Dod01g0982 1175 Pfam Regulator of chromosome condensation (RCC1) repeat 372 420 IPR000408 -
Dod01g0982 1175 Pfam Regulator of chromosome condensation (RCC1) repeat 425 474 IPR000408 -
Dod01g0982 1175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 704 773 IPR013083 -
Dod01g0982 1175 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 372 423 IPR000408 -
Dod01g0982 1175 MobiDBLite consensus disorder prediction 772 800 - -
Dod01g0982 1175 MobiDBLite consensus disorder prediction 1148 1175 - -
Dod01g0982 1175 MobiDBLite consensus disorder prediction 1006 1094 - -
Dod01g0982 1175 Coils Coil 898 925 - -
Dod01g0982 1175 Pfam Pleckstrin homology domain 102 210 IPR001849 -
Dod01g0982 1175 Pfam Transcription factor regulating root and shoot growth via Pin3 1093 1147 IPR013591 -
Dod01g0982 1175 MobiDBLite consensus disorder prediction 1148 1166 - -
Dod01g0982 1175 MobiDBLite consensus disorder prediction 860 894 - -
Dod01g0982 1175 CDD FYVE_like_SF 707 759 - -
Dod01g0982 1175 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 517 527 IPR000408 -
Dod01g0982 1175 Gene3D - 290 533 IPR009091 -
Dod01g0982 1175 SUPERFAMILY RCC1/BLIP-II 313 698 IPR009091 -
Dod01g0982 1175 SUPERFAMILY PH domain-like 100 210 - -
Dod01g0982 1175 SMART fyve_4 695 764 IPR000306 GO:0046872
Dod01g0982 1175 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 541 592 IPR000408 -
Dod01g0982 1175 MobiDBLite consensus disorder prediction 1052 1072 - -
Dod01g0982 1175 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 701 763 IPR017455 -
Dod01g0982 1175 MobiDBLite consensus disorder prediction 1031 1045 - -
Dod01g0982 1175 SUPERFAMILY FYVE/PHD zinc finger 697 765 IPR011011 -
Dod01g0982 1175 Gene3D - 98 219 IPR011993 -
Dod01g0982 1175 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 645 696 IPR000408 -
Dod01g0982 1175 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 100 1154 - -
Dod01g0982 1175 Pfam FYVE zinc finger 697 763 IPR000306 GO:0046872
Dod01g0982 1175 Gene3D - 534 703 IPR009091 -
Dod01g0982 1175 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 593 644 IPR000408 -
Dod01g0982 1175 MobiDBLite consensus disorder prediction 860 885 - -
Dod01g0982 1175 ProSiteProfiles BRX domain profile. 1093 1148 IPR013591 -
Dod01g0982 1175 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 479 530 IPR000408 -
Dod01g0982 1175 Pfam Transcription factor BRX N-terminal domain 949 984 IPR027988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0982 Dod-Chr1 18176717 18184563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0982 1087 1153 Major Intrinsic Protein MIP AT1G31880 38.806 2.83e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0982 - - gmx:100779684 1554.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0982 01 18176717 18184563 Dod07g1649 07 44023643 44035400 PCT