Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0979 ATGGCTTCCAGGGAGAGAAGAAGGGAGGCTCTTCAACAAAAGTTGCATCAACTTCGAGATCTGAACAAAGCCTCAATTATTGCGGACGCAACTGGATATATAGAGGAGTTGAAGCAAAAAGTGGAGGGACTGAACTCGGAGCTTGGTGAATCATCAACCATTGATGAACTGCCAATGGTCACCGTGGGAACCCTAGAAAAGGGTTTCCTCATTAACGTGTATTCAGAAAAGAATTGCCCTGGTATGCTGGTCTCAATACTTAAAGCCTTTGAAGAACTGGGACTTGATGTGCTTGATGCTAGGGTTTCTTGTGAAGAAACTTTCCAGCTAGAAGCTGTGGGAGGAGAACCTCCAATATCAGTCCACGACTCATTCTCAACGAAAAATGATATTTAA 396 0.4369 MASRERRREALQQKLHQLRDLNKASIIADATGYIEELKQKVEGLNSELGESSTIDELPMVTVGTLEKGFLINVYSEKNCPGMLVSILKAFEELGLDVLDARVSCEETFQLEAVGGEPPISVHDSFSTKNDI* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0979 131 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 119 - -
Dod01g0979 131 CDD ACT_UUR-ACR-like 70 117 - -
Dod01g0979 131 Coils Coil 1 21 - -
Dod01g0979 131 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 52 IPR036638 GO:0046983
Dod01g0979 131 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 119 - -
Dod01g0979 131 Coils Coil 27 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0979 Dod-Chr1 18082213 18082942 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0979 6 120 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46510 28.467 3.88e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0979 - - vra:106759069 169.088
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0979 01 18082213 18082942 Dod08g0963 08 11946023 11947736 ECH
Dod01g0979 01 18082213 18082942 Dod04g0420 04 5551924 5554399 ECH
Dod01g0979 01 18082213 18082942 Dod01g0979 01 18082213 18082942 ECH
Dod01g0979 01 18082213 18082942 Dod05g0432 05 6068943 6070760 ECH