Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0958 ATGAAATTACAACGCCGTGTTCTCGACACAGAATTGAGCTTGCCACCACCATCATCATCACCACCATCTTCTTCTTCTCATGGAAACACCACCACCAACAACAGCATCAAGATCCACGATTCTTCCTTCATCAACGAAGCCAACTTCGACACCAACATGGTCATCATCCTCGCAGCACTCTTATGCGCCCTCATATGCGCTCTAGGCCTAAACTCCATTGCACGATGCGCCCTCCGCTGCGGCCGGCGGTTCTCTCCGGAGTCGCCGGATCAGGCGGCGGCGAGGCTGTCCATGACGGGGCTGAAGAAGAGCCACCTGCGGCGGATTCCAGTAGCAGTGTACGGATCCGGCGAGGAGATTCCGGCGACGGAGTGCCCCATATGCTTGGGGGAGTTCGAGAAAGGGGACAAGGTTAGGATGCTGCCGCAGTGCAAGCACGGGTTCCACGTGCGCTGTATTGACACGTGGCTATTGTCGCATTCTTCTTGTCCCAATTGTAGACACTCGCTGTTAGAGGGACCAAATAAAATTGGTTGTTCTTCTTCCGAGGGTTCTGGTGGTGGTGGCGGTGGTGGAGCGGCGGTGCCGGAAAATGGTTCCGGCGAGGGGGGAGGAGGAGGTAGTGTCGTGGTGGTTGTCGACCAGGCAAGTTAG 654 0.5627 MKLQRRVLDTELSLPPPSSSPPSSSSHGNTTTNNSIKIHDSSFINEANFDTNMVIILAALLCALICALGLNSIARCALRCGRRFSPESPDQAAARLSMTGLKKSHLRRIPVAVYGSGEEIPATECPICLGEFEKGDKVRMLPQCKHGFHVRCIDTWLLSHSSCPNCRHSLLEGPNKIGCSSSEGSGGGGGGGAAVPENGSGEGGGGGSVVVVVDQAS* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0958 217 SUPERFAMILY RING/U-box 109 173 - -
Dod01g0958 217 CDD mRING-H2-C3H2C2D_ZSWM2 124 167 - -
Dod01g0958 217 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Dod01g0958 217 MobiDBLite consensus disorder prediction 1 32 - -
Dod01g0958 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 171 IPR013083 -
Dod01g0958 217 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 4 185 - -
Dod01g0958 217 Pfam Ring finger domain 124 167 IPR001841 -
Dod01g0958 217 PANTHER RING-H2 FINGER PROTEIN ATL74 4 185 - -
Dod01g0958 217 MobiDBLite consensus disorder prediction 181 217 - -
Dod01g0958 217 SMART ring_2 125 166 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0958 Dod-Chr1 17554732 17556593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0958 44 183 C3H Transcription Factor Family AT3G10910 61.184 1.51e-55 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0958 - K19040 gmx:100814602 226.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0958 01 17554732 17556593 Dod01g0958 01 17554732 17556593 ECH