Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0930 ATGGCTTCCCTCATCAGTACAACTTCAGCCACACTTCAACATAATCATCATACAACATGCTTCTCTCCTATGAAATCCACCATCACCCCAGATAAATTTTCCTTCTTAACAAAACGTTTCAAGAGTAATAACTCTTTCAAGTGCAATGCAATTTTTGATAACATCCCCAAAGACTTATTGTTGGACTACACTTTTTACCTGGACCAGTTTCCTGTATTCAGGTCAGGTTTGATGAAGTTCCAGAGTGTAACTGAAGACTTACCAGACGTGCAAAAGTTGGGGTTTCTTGTTTTTGCTGGGCTGGCATGGATTTACCTAACTGCAAGGCCTGGTGTTCTTGTTGGAGCCATTGATGCATACCTTCTGGCTCCATTGCAACTGGTTTTGGACAGTTTATCTGGAAGGAGGAGTCTCAAGAGGAGTGATTTTCTGATTGGAGATAAGTTGGGAGAAGGGTCATTTGGTGTTGTATATTCAGGTGTTTTGGTCCCAAAGAATTTGTATGTAGAAGAGGGGATGCAGAAGAGTGCAAAGGGGAAGGTAACAAAGAGTGCAAAGGGGAAGGTAACAAAGTTGGATGCTAAATCTAAGGACAAAGTCATTCTCAAAAAGGTAAAGGTTGGAATTGAAGGGGCTGAAGAATTTGGTGATTTTGAGGAGTGGTTCAATTATAGGCTCTCTAGAGCAGCTCCTGAAACATGTGCTAAGTTCCTCGGAAGTTTTGTAGCAGATAAAAGCAATTCACATTTCACAAAAGGTGGAAAATGGCTTGTTTGGAAGTTTGAGGGAGATCGCTCTCTTGCTGATTACATGACAGATCGCAACTTCCCTTCAAACTTAGAGCCAGTCATGTTTCGACGTGTCTTGCAAGGTGTAAACTCTTCTAAACGAAACGCATTGATCATCAAGCAAATAATGCGCCAGATCATTGCATCGCTTAAGAAAATTCATGACACAGGCATTGTTCACAGGGATGTAAAGCCTGCCAATTTGGTGGTTACTAGATGGGGGCAGATTAAACTCATTGATTTTGGTTCGGCTACTGACCTGCGCATTGGAAAGAATTATGTTCCAAATTACACCCCGTTGGATCGTGACTACTGTCCCCCTGAATTATATGTGCTACCACAGGAAACTTCAAGTCTTCCACCAGAGCCAATTGCAGCTCTCCTTTCACCAATCTTGTGGCAGTTAAGAAGTCCTGATCTGTTTGATATGTATTCTGCCGGGATTGTACTCCTTCAAATGGCAATACCAACCATAAGGTCTGCAGTTGGTTTGAAGAATTTCAATCTGGAATTGAAAAACTGTGGATATGATTTGAACCAATGGAGGGACTTTACTCGCAGCAAGTTTGACTTCCAAATCCTTGATAGTGACTCCGGTAGAGGGTGGGACTTAGCAACCAAGCTTGTCTCTAAGAGAGATTCCCCAACAAGCGGGCGTTTATCTGCTGCTGCTGCTTTGAGGCATCCTTATTTCCTTCTTGGTGGTGATCAGGCAGCTATAGTCCTTTCAAAATTAAGCTTAAGCACAAAATGA 1542 0.4228 MASLISTTSATLQHNHHTTCFSPMKSTITPDKFSFLTKRFKSNNSFKCNAIFDNIPKDLLLDYTFYLDQFPVFRSGLMKFQSVTEDLPDVQKLGFLVFAGLAWIYLTARPGVLVGAIDAYLLAPLQLVLDSLSGRRSLKRSDFLIGDKLGEGSFGVVYSGVLVPKNLYVEEGMQKSAKGKVTKSAKGKVTKLDAKSKDKVILKKVKVGIEGAEEFGDFEEWFNYRLSRAAPETCAKFLGSFVADKSNSHFTKGGKWLVWKFEGDRSLADYMTDRNFPSNLEPVMFRRVLQGVNSSKRNALIIKQIMRQIIASLKKIHDTGIVHRDVKPANLVVTRWGQIKLIDFGSATDLRIGKNYVPNYTPLDRDYCPPELYVLPQETSSLPPEPIAALLSPILWQLRSPDLFDMYSAGIVLLQMAIPTIRSAVGLKNFNLELKNCGYDLNQWRDFTRSKFDFQILDSDSGRGWDLATKLVSKRDSPTSGRLSAAAALRHPYFLLGGDQAAIVLSKLSLSTK* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0930 513 Gene3D Transferase(Phosphotransferase) domain 1 288 496 - -
Dod01g0930 513 Gene3D Phosphorylase Kinase; domain 1 165 261 - -
Dod01g0930 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 321 333 IPR008271 GO:0004672|GO:0006468
Dod01g0930 513 SUPERFAMILY Protein kinase-like (PK-like) 140 495 IPR011009 -
Dod01g0930 513 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC 2 511 - -
Dod01g0930 513 SMART serkin_6 143 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g0930 513 ProSiteProfiles Protein kinase domain profile. 143 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g0930 513 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 2 511 IPR044803 GO:0004674|GO:0009579
Dod01g0930 513 Pfam Protein kinase domain 301 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0930 Dod-Chr1 17168326 17171650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0930 143 350 MAP Kinase Kinase Kinase AT3G13530 24.171 1.83e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Dod01g0930 Pkinase 1.1e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0930 - - gmx:100795624 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0930 01 17168326 17171650 Dod01g0930 01 17168326 17171650 ECH
Dod01g0930 01 17168326 17171650 Dod07g2231 07 54077153 54078201 PCT
Dod07g2230 07 54069699 54077148 Dod01g0930 01 17168326 17171650 PCT