Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0902 ATGGAACCGAGCCCCGACATGTTCAGAGTTCCATCTTCAGGAGTTGGAGGAGGACCCGGACCTTCTTCTTCGTCTTCCTCTTCCTTGCTTTCTTCGTCGTCGTCTTCGTCAATTTCTTCTTTGTCGTCTTCGAATTCTAGAAGGTTCGGAACCCTGTCCCCCTCCAACATCATCAACGCGCCTTTATCTCTCTTATTAGAGTATTCTGGGATTCTCCGAACCACCACAAATGCAAGGTCCAATCACAGTCACAATCACCACCAGCAGCAACTTAACCCTAACCCTAATTCCGAGTCTTCCCCAAACGATGGCGAGGTCTCGATTAGGATCATTGGGCCATCGGAACCCGACCATCATAATCATCACAGGGAAGAATCACAACCTTCTTCTTCTTCTTCATCATCTTCTTCTGGTGGTGGTTTGGTTGTTGGGCTTTCTCGCAATGAGGGCATGGCCATGATAAACGATGAAGGCGTGACCGGGGCGGTGGCCGGAGACAGTGGCGGAATTGGGATTGGGAATGGGAATGGGGATTCTGATGCTGAAGCCGATGGCGATGGCGTTGGCGGTGGTGGTGCCAATGGGAGGGATTCTTCTTACCAGCGGTATGATATTCAGCATGCTGCACGGTGGGTGGAGCAGGTTCTTCCTTTCTCTTTGCTCCTCTTGGTGGTCTTCATCCGCCAGCATTTGCAAGGGTTTTTTGTTACGATTTGGATTGCGGCTGTGCTTTTCAAGTCAAATGACATTCTAAGGAAACAAACAGCTCTGAAGGGAGAGAGGAAAATACCTGTTCTGATTGGGATTTCTGTTGCATTTTCACTTCAAGTGGTTGGCGTCTATTGGTGGTATCAGAATGATGATCTGATGTATCCGTTGGTCATGCTTCCTCCCAGAGAGATACCAGCCTTTTGGCATGCGATTTTCATCATCATGGTGAATGATACTTTGGTCCGCCAGGCTGCAATGGTATTCAAGTGTATATTATTGATGTATTACAAGAACAGCAGAGGCCGAAATTATCGTAAGCAGGGACAAATGCTGACAGTAGTCGAATACCTTTTTCTGCTTTACCGTGCCTTGTTGCCAACACCAGTCTGGTATCGTTTCTTTCTGAACAAAGAATATGGAAGCCTCTTTTCATCGCTGATGACAGGACTATATCTAACATTTAAGCTCACATCTGTTGTTGAGAAGGTGCAATCCTTCTTTGCTGCAGTGAAGGCATTGTCACGTAGAGAAGTGCACTATGGGGCTTATGCAACATCAGAGCAGGTCAATGCAGCTGGTGATCTTTGTGCTATTTGTCAGGAGAAGATGCATGCTCCAATATTACTACGTTGTAAACACATATTCTGTGAAGATTGTGTATCAGAGTGGTTTGAGAGGGAAAGGACGTGCCCATTGTGCAGGGCTTTGGTAAAACCTGCTGACCTCAGGTCATTTGGTGATGGTTCTACCAGTTTGTTTTTCCAGTTATTCTGA 1485 0.4667 MEPSPDMFRVPSSGVGGGPGPSSSSSSSLLSSSSSSSISSLSSSNSRRFGTLSPSNIINAPLSLLLEYSGILRTTTNARSNHSHNHHQQQLNPNPNSESSPNDGEVSIRIIGPSEPDHHNHHREESQPSSSSSSSSSGGGLVVGLSRNEGMAMINDEGVTGAVAGDSGGIGIGNGNGDSDAEADGDGVGGGGANGRDSSYQRYDIQHAARWVEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRKQTALKGERKIPVLIGISVAFSLQVVGVYWWYQNDDLMYPLVMLPPREIPAFWHAIFIIMVNDTLVRQAAMVFKCILLMYYKNSRGRNYRKQGQMLTVVEYLFLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRREVHYGAYATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0902 494 MobiDBLite consensus disorder prediction 78 142 - -
Dod01g0902 494 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 32 494 IPR044235 GO:0061630|GO:1904294
Dod01g0902 494 CDD RING-HC_RNFT1_like 432 471 - -
Dod01g0902 494 Pfam Zinc finger, C3HC4 type (RING finger) 431 474 - -
Dod01g0902 494 MobiDBLite consensus disorder prediction 112 126 - -
Dod01g0902 494 MobiDBLite consensus disorder prediction 17 54 - -
Dod01g0902 494 ProSitePatterns Zinc finger RING-type signature. 448 457 IPR017907 -
Dod01g0902 494 MobiDBLite consensus disorder prediction 78 104 - -
Dod01g0902 494 SUPERFAMILY RING/U-box 426 476 - -
Dod01g0902 494 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 481 IPR013083 -
Dod01g0902 494 MobiDBLite consensus disorder prediction 171 195 - -
Dod01g0902 494 MobiDBLite consensus disorder prediction 1 54 - -
Dod01g0902 494 ProSiteProfiles Zinc finger RING-type profile. 433 471 IPR001841 -
Dod01g0902 494 MobiDBLite consensus disorder prediction 127 142 - -
Dod01g0902 494 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 32 494 - -
Dod01g0902 494 SMART ring_2 433 470 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0902 Dod-Chr1 16686186 16691756 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0902 47 494 C3H Transcription Factor Family AT5G01960 68.750 0.0 613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0902 - K22379 aip:107639742 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0902 01 16686186 16691756 Dod01g0902 01 16686186 16691756 ECH