Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0900 ATGTCTGCATATTCTGAAAACATTGCAGTTTGTTCTCTTTGCCAAAAGGCACTATCACCTGATAATGAGATAACAAGTGATCCTACAGCCAATGGTGTATGCGGTGATTGCAAGTTTTTACTACTTGAAGACTTTGGGACTCATATGGTTCCCCAAATCTCACAAAGAAGGCTTAGAAGGAGATTCAGGAACAACAGTTCTGAGTCAGTTGAAAACTTGTTCAATGCTGTGAGGCAAAACCAATCCACTGCGTCTGCAGAGGATGATCAACAAGCCTTAGAGTCGTTGCAGTATGCTAGTACACATACTACCCCTAGCGGGTCTAGAAGTTGGTGGCGTGTTCTTTCTGATACTGACAGTGATGGTTTTGATAATTGGAGCTCTCTTTATGGTGAAAATGAGTCAAATGCGAGCTTTAGACGGTACAGGGTTCCTCATGGTGAGATTGATTCGTTCTCTTTCAGCACTTATGGAGGTGACTCGGATGTCTCTATGGACAGACATAGTCTTTTTGGTGCAGGAATGTTTGATTTACCACATGACGGAGATGCGTTTGATAGTGACACTGATATAGATCCAATGCATGCTGGACTAAGCCATTGGAACTCAGATGATATAGAAGATGAGGAGGAGGAAGAAGAAGAAGAGGATGATGGTGATGAAGAGGAGGAGGAGGAAGCAAGGGAATGGGAACTAGCTGAGGCTGAGGAAGTTGATGGCACACGCCCTCAAATGTTTTTCACATCAAATCCAAGTGAGAGTAGGGGTCGCATCACTGAATCTGAGGTGGCCCAGATAATCAATAACTTGCGAACTTTCGCTGATCGCAGCGATGCTAACTCAGGGGATGCCAGTTTACCTCCCTATGGTGCAAACTTTGGTGATTATCTTGATGCTAGACAATTTGAAGATCTTCTTGAGCATCTTGCTGAGAATGACAGCTTGAGACGAGGAGCACCTCCTGCATCTTTGTCTTTTGTGAATAATTTGCCCCATGTAGTGGTTGGCAAGGAGCACGAGAAGCATGGCGAACTAATTTGTGCCATTTGCAAGGATGTCTTGGCCCCAGGCACCGAAGCAAGTCAGCTTCCCTGCTCCCATCTTTATCACACCTGTTGCATTTTGCCATGGTTGAGTGCACGGAATTCATGTCCTCTATGTCGATATGAGCTTCCAACTGATGATAAGGATTATGAAGAGGGAAAGCAGAACATCAATGGTAGACATGTGATCAACGAGAGGCAGGAACTAGATGTGGTGGATGATAGTTTATCCGATGTCTCCGTTGAAGCTGAAGTGAATCTAGCAGATACTACTAGTCAAAGCATCAGACAGCAGAGAGAAGCCGTGAGCTTGGATTCCACCACAAATTCTTCTGCAGCAAGAGGTGGTAGAGGAAGATGGTTTTTTCTTGCCGCAGCTCCAGTTCTCAGTCTAGTTGGCATTGTCCTTGTCCTGTGGTCAGGCAACTCTCAGATTGAAGGGAGTAGCCATCTCAGTCGTCGGAATTTGTCTGCGCAAAATCAGCATGCAGTTCATGTTTATGCCTCACCTGATCAAAGGGAGAGTAGAAGCAGGAGATGGTGGTGCCCATTCTAA 1599 0.4528 MSAYSENIAVCSLCQKALSPDNEITSDPTANGVCGDCKFLLLEDFGTHMVPQISQRRLRRRFRNNSSESVENLFNAVRQNQSTASAEDDQQALESLQYASTHTTPSGSRSWWRVLSDTDSDGFDNWSSLYGENESNASFRRYRVPHGEIDSFSFSTYGGDSDVSMDRHSLFGAGMFDLPHDGDAFDSDTDIDPMHAGLSHWNSDDIEDEEEEEEEEDDGDEEEEEEAREWELAEAEEVDGTRPQMFFTSNPSESRGRITESEVAQIINNLRTFADRSDANSGDASLPPYGANFGDYLDARQFEDLLEHLAENDSLRRGAPPASLSFVNNLPHVVVGKEHEKHGELICAICKDVLAPGTEASQLPCSHLYHTCCILPWLSARNSCPLCRYELPTDDKDYEEGKQNINGRHVINERQELDVVDDSLSDVSVEAEVNLADTTSQSIRQQREAVSLDSTTNSSAARGGRGRWFFLAAAPVLSLVGIVLVLWSGNSQIEGSSHLSRRNLSAQNQHAVHVYASPDQRESRSRRWWCPF* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0900 532 SUPERFAMILY RING/U-box 335 394 - -
Dod01g0900 532 Pfam Ring finger domain 347 388 IPR001841 -
Dod01g0900 532 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 308 394 IPR013083 -
Dod01g0900 532 ProSiteProfiles Zinc finger RING-type profile. 347 388 IPR001841 -
Dod01g0900 532 Coils Coil 206 226 - -
Dod01g0900 532 MobiDBLite consensus disorder prediction 204 233 - -
Dod01g0900 532 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 275 456 - -
Dod01g0900 532 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 275 456 - -
Dod01g0900 532 MobiDBLite consensus disorder prediction 184 257 - -
Dod01g0900 532 SMART ring_2 347 387 IPR001841 -
Dod01g0900 532 MobiDBLite consensus disorder prediction 243 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0900 Dod-Chr1 16668359 16671865 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0900 9 532 C3H Transcription Factor Family AT5G01980 42.419 6.63e-113 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0900 - - gmx:100797923 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0900 01 16668359 16671865 Dod01g0900 01 16668359 16671865 ECH