Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0889 ATGGAAGATCCTAGGTTTGTTGTTCCATATTATGACCCATATGACACTCCACTTAGCCCTAGCATTTTCAACGTAGCCAATCCCACACTAGCCGATTTTACCAATATTGTCGGACCCAGTACATTGGCGCCCCCACAACAAAATCATCACGGAGTGCAAGAGGGTGATCCCTATTTTGATCCAATGATTCAAGATCACTTTGTGCAAGATAATTTTCCCATTGGTGGAGGAGAAGTTGGGAACTTTGAAGCCGGTCCATCATCAAAGGTGCAAGTGAATCAAGGCCAGCCTCCAACAGATGGTATTTTGGGTTCACAGGATTACAACGATGTGATGACACTTGCCCATTGGCCCCAACCAGCGGTCCCATTTTCTTGCAGTTGCTGTTTAGTTTTAAGAGAAATAGTTCATACTAATGGATTAAACCTTACAAAACTCGAGATTCATGGAAGACCGGGCATGATCTCCCATGTAATCCAACACCCCACTATCAGCATGGATTATTCTTCAAGCAGCAACCTTCAATATCAAATGATTGATTTCTGTAGGAGAAGCATAGAGGATGTTAAGAATTTCCTAGTGCAGTACTGCGTGGCTCAAACTTCAGCAGGGTACTTTATTCTACAAGATCCACTATCTGCCTATTACGAGACCCTTTGCACTGGAATGGAATGGACTGAAGAGTTAAGTGATGATACAGACGATTTGAATGCAAATAATTCAGACGATGACAATGAACAAGTGGTTGACAATGGGACTGGGAGGCCTGCAAGAAGAGCATCACTTTCAGTACAGAGGGACAGAGCAGGGAAGATGCAATTGGATGATTTCACTGATTACTTTCATCTGCCCATCGAAGAAGCGTCAAGGCAACTGAACTTATGTTCCACTGTCGTGAAGAAGATTTGCCGAAAAGAAGGATTAAAACGATGGCCTCATAGAAAGATCAAAAGCATTGCGAAGATGATCTCAGCACTCAGAAAAACTTTAGAATCAAACGATGCACATTCAAGGGTAAGAATTCAGGCTGAAATTTGCAGGCTTGAAGCTAAAATGAGAAAGCATTGTGCTGGACGATACCCAACCGGATTAGTTATCCCATGA 1104 0.4275 MEDPRFVVPYYDPYDTPLSPSIFNVANPTLADFTNIVGPSTLAPPQQNHHGVQEGDPYFDPMIQDHFVQDNFPIGGGEVGNFEAGPSSKVQVNQGQPPTDGILGSQDYNDVMTLAHWPQPAVPFSCSCCLVLREIVHTNGLNLTKLEIHGRPGMISHVIQHPTISMDYSSSSNLQYQMIDFCRRSIEDVKNFLVQYCVAQTSAGYFILQDPLSAYYETLCTGMEWTEELSDDTDDLNANNSDDDNEQVVDNGTGRPARRASLSVQRDRAGKMQLDDFTDYFHLPIEEASRQLNLCSTVVKKICRKEGLKRWPHRKIKSIAKMISALRKTLESNDAHSRVRIQAEICRLEAKMRKHCAGRYPTGLVIP* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0889 367 ProSiteProfiles RWP-RK domain profile. 259 339 IPR003035 -
Dod01g0889 367 MobiDBLite consensus disorder prediction 231 262 - -
Dod01g0889 367 PANTHER RWP-RK DOMAIN PROTEIN 3 358 - -
Dod01g0889 367 PANTHER PROTEIN RKD4 3 358 IPR044607 GO:0003700
Dod01g0889 367 Pfam RWP-RK domain 272 319 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0889 Dod-Chr1 16379696 16381862 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0889 280 352 AtRKD Transcription Factor Family AT5G66990 38.158 4.32e-12 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Dod01g0889 RWP-RK 6.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0889 - - adu:107470643 468.774