Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0884 ATGGCTGCTTGTGCTTTGTTCAGTGGTGGCAGTAACAACAGTGCTACTGAAGATGGGAATGTCACCAACAACAACAATGGTGGAAGTGGAAGCAGCCCTTTGAACAGTGCCTCTAACTCCAGCAACATGAGCAGTGAGGGACACACACAACAACAACGACGACAACAACACAGCCTTCTACAACATGGTATGGCTCAGGCTCAGCCTCATTGTGAGAGGAAAATGGTGAGAAAGAGAATGGCATCTGAGATGGAACTAGTTCATGCCACCACCAACAACACCATCTCACTCCACAACAACAACAGCTGTGAGTACCCTAGGTTTCCTCGTCGAAGCAGCAGCAACAACAACAACAACAGCAGCAGCAACAACATGTCCTCTTTGATTTGCTCTCTGCCAGCCTCAGAAAAAGTTTCTACAACAACATCAGCAGCAGCAACAACTACAACAGGTAGTTGTAACTTTCACTATAATAATACTAATACTAATAATACTACAAATAATAATAATAATAATGGTGATGTTCCATCAAGAGATAACGTTACTATTCCAATTCCAAATTACCCCATTGTGACGCTCACAACCAACTACTCCACTATGATGCTACCTTCTTCTGCCCCTTCTTCCACCAATCTCATCAACACCCTCAATTCCTCTTCTTCTCTCTCAATACCCTCTACTACCATCACGGTTTCTGCTCCAAACTACACTCACCACCATTTCCATCAAGGACTTGAGAGCCAAAGCCATCATCATCAGGACCAGAACACTGTGCCTGCTGTGTGTGGATTCTCGGGTTTGCCACTGTTTACATCTCAAAGCCAAAGGAACCGAGAAACCAACAACAACAACAGTAGTATTGGTAACAATATTGTTGAGGTTGTTGCTTCTCCTCCTTCTTCAATGGATGACAACTCGGCCACAACTAATTGGATCGATGGAATACTGAAGGATCTCATCCACAGCTCCAACAGTGTCTCCATCCCTCAGCTTATCAACAACGTGAGGGAGATTATATACCCTTGCAACCCAAACTTAGCCATGGTTCTTGAGTACAGGCTTCGACTCCTCACTGAGTCCACCACCACATCCACAACAACACCAAAAAGGAACAACACCATCACAGAAGGGGTAGTGGTTCCTCCTTTGCCTGTGCAAGTTCCTGTTTCTTCATCAGTGAAGCACATGATGAACACTCGTGTGGATAGTGCTGCTGGTGGTGTCATTGTTCCCAATTTGCATTTTCCAGATGCTGCTGTTGTGAATCAAAACATGTTGTCCAATTGGGGTGTGCCCCAAACAATCACTACAAGCAATCATCATCATCACCATGATGGTGGTACCAACAACAACTCTTCAGTTTCATTATCTACTTTACCATCACCACCATCAACTCATCACCAAGGTTACTCACCACCCCAACAAGACAAACCTCAAGAGGAAGATCTTGGTGCTGCGGCAGCTGCAGCAGCAACTAGCAGCACTGTAGCTGCTCATGAGATGGTGCTATCAAGGAAGAAGAAAGAGGAGATGAGGCAACAAAAGAAGAAAGATGAAGAAGGGTTGCACCTCCTCACTTTGCTTCTTCAGTGTGCTGAGGCAGTGTCAGCTGAGAATCTAGAAGATGCCAACAAGATGCTTCTTGAGATTTCCCAACTGTCCACCCCATTTGGGACATCAGCACAGCGTGTTGCAGCATACTTCTCAGAAGCCATATCAGCAAGGCTTGTTAGCTCTTGCTTGGGAATCTATGCAACACTGCCAATGGTGCCCCACAGCCACACACAAAAAGTTGCATCAGCTTTCCAAGTCTTCAATGGGATAAGCCCTTTTGTGAAGTTCTCTCACTTCACTGCAAACCAGGCAATACAAGAAGCATTTGAGAGGGAGGAGAGGGTGCACATCATCGACCTTGACATAATGCAAGGTTTGCAGTGGCCTGGTTTGTTCCACATACTTGCTTCAAGGCCTGGTGGTCCACCTTATGTGAGGATCACTGGGCTTGGAACCTCCATGGAAGCACTTGAGGCCACAGGGAAGAGGCTTTCTGACTTTGCTAACAAGCTTGGGCTACCCTTTGAGTTCTTTCCTGTTGCTGACAAAGTTGGGAACCTTGACCCTGAGAGGCTTAATGTTAGCAAGACAGAAGCTGTTGCTGTGCACTGGTTGCAGCATTCACTTTATGATGTCACTGGCTCAGACACAAACACTTTGTGGCTTTTGCAGAGGCTGGCACCTAAAGTGGTGACAGTGGTGGAGCAAGACCTGAGCAATGCTGGTTCCTTTTTGGGGAGGTTTGTGGAAGCCATACACTACTACTCAGCACTATTTGACTCTCTTGGTTCAAGCTATGGGGAGGAGAGTGAGGAGAGGCATGTGGTGGAGCAGCAGCTACTATCAAGAGAGATTCGCAATGTGCTAGCCGTTGGGGGGCCATCAAGGACTGGTGAGCTCAAGTTTCACAACTGGAGGGAGAAGCTTCAACAATGTGGGTTTAGAGGCATATCACTGGCTGGTAATGCTGCCACACAGGCCAGTCTATTACTTGGCATGTTCCCTTCTGAAGGGTATACCTTGGTGGAGGACAATGGAATCCTTAAACTTGGTTGGAAGGATCTTTGCTTGCTCACTGCTTCAGCTTGGAGACCACCCTACCACAGTGGCATTGCCATTACACATCATAGTTAA 2688 0.4654 MAACALFSGGSNNSATEDGNVTNNNNGGSGSSPLNSASNSSNMSSEGHTQQQRRQQHSLLQHGMAQAQPHCERKMVRKRMASEMELVHATTNNTISLHNNNSCEYPRFPRRSSSNNNNNSSSNNMSSLICSLPASEKVSTTTSAAATTTTGSCNFHYNNTNTNNTTNNNNNNGDVPSRDNVTIPIPNYPIVTLTTNYSTMMLPSSAPSSTNLINTLNSSSSLSIPSTTITVSAPNYTHHHFHQGLESQSHHHQDQNTVPAVCGFSGLPLFTSQSQRNRETNNNNSSIGNNIVEVVASPPSSMDDNSATTNWIDGILKDLIHSSNSVSIPQLINNVREIIYPCNPNLAMVLEYRLRLLTESTTTSTTTPKRNNTITEGVVVPPLPVQVPVSSSVKHMMNTRVDSAAGGVIVPNLHFPDAAVVNQNMLSNWGVPQTITTSNHHHHHDGGTNNNSSVSLSTLPSPPSTHHQGYSPPQQDKPQEEDLGAAAAAAATSSTVAAHEMVLSRKKKEEMRQQKKKDEEGLHLLTLLLQCAEAVSAENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPMVPHSHTQKVASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRITGLGTSMEALEATGKRLSDFANKLGLPFEFFPVADKVGNLDPERLNVSKTEAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSNAGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRTGELKFHNWREKLQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPYHSGIAITHHS* 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0884 895 Pfam GRAS domain family 525 882 IPR005202 -
Dod01g0884 895 ProSiteProfiles GRAS family profile. 515 882 IPR005202 -
Dod01g0884 895 MobiDBLite consensus disorder prediction 7 63 - -
Dod01g0884 895 MobiDBLite consensus disorder prediction 432 490 - -
Dod01g0884 895 MobiDBLite consensus disorder prediction 91 125 - -
Dod01g0884 895 MobiDBLite consensus disorder prediction 6 71 - -
Dod01g0884 895 MobiDBLite consensus disorder prediction 448 475 - -
Dod01g0884 895 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 235 884 IPR005202 -
Dod01g0884 895 PANTHER PROTEIN SCARECROW 235 884 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0884 Dod-Chr1 16214221 16218385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0884 478 883 GRAS Transcription Factor Family AT3G54220 81.373 0.0 674
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dod01g0884 GRAS 6.2e-125 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0884 - - gmx:100806779 1025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0884 01 16214221 16218385 Dod01g0884 01 16214221 16218385 ECH