Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0876 ATGGATGCAAGAGAAGGTATTAGCTCTGGGGTTACAGTGATAGGGGCAGAAGCTCCCTCAGCCTATCATGTGGCACCAAGGAGTGAAGCTCCAAGCCAGGGTCCTGTCCCTGATGCTGCTGCCAGCACGGCGGCGGCCGCCACCGGAGGCGGTGCTGTTGGTCTCTCACCAGTGAGTGTGGGATTGGATGGAGCAACAGTTAAGAAGAAACGGGGTCGACCGAGGAAATATGGCCAAGATGGGTCAGTTTCTATGGCATTGTCACCATTCCCAATCTCATCTTCAGCTCTGCCTTCAAATGTATTTTCGACCGGGAAGCGGGGGAAGCCGCATGGAATGGAGTACAAGCAGTCAAAAAAATTTGGAGGGGATTATCTAGGTGAATCTGTTGGTACAAACTTTATGCCCCATATCATTACCGTCAATACTGGCGAGGACATTACAATGAAGGTTATATCCTTTTCCCAACAAGGACCCCGAGCTATATGCATCTTATCTGCTACAGGTGTAATTTCAAATGTTACACTTCGTCAGCCTGATTCTTCGGGTGGCACTTTGACCTATGAGGGTCGCTTCGAGATACTTTCCTTAACTGGTTCATTCATGCCCACTGACAACCAAGGAACAAGAAGCAGGTCAGGTGGGATGAGCGTTACTTTGTCAAGCCCTGATGGCCGTGTTGTAGGCGGTGGAGTTGCTGGTCTTCTTGTAGCTGCTTGTCCTGTGCAGGTGGTTGTGGGAAGTTTTCTGCCAAGCAACCAGCAAGATCAGAAACCAAAGAAGCACAAGTCTGATTATGCACCACCAGCAACAATTACCCCAGCCATTGCAGTTTCTTCTGCACCACCTTCAACTAATGGTGATAAAGAGGATGTCATGGGTGGACATGTGCTGCAAAATTCTGGACCCTTCAACTCCAGCTTCACTCCTCCCTCAAACTTTCGCAGAGAAAACTGGGTTAACATGCATTCTATGCCGGACTCGATGAAATCCACCACTGATATTAACATATCTTTGCCAGATAATTAA 1029 0.4849 MDAREGISSGVTVIGAEAPSAYHVAPRSEAPSQGPVPDAAASTAAAATGGGAVGLSPVSVGLDGATVKKKRGRPRKYGQDGSVSMALSPFPISSSALPSNVFSTGKRGKPHGMEYKQSKKFGGDYLGESVGTNFMPHIITVNTGEDITMKVISFSQQGPRAICILSATGVISNVTLRQPDSSGGTLTYEGRFEILSLTGSFMPTDNQGTRSRSGGMSVTLSSPDGRVVGGGVAGLLVAACPVQVVVGSFLPSNQQDQKPKKHKSDYAPPATITPAIAVSSAPPSTNGDKEDVMGGHVLQNSGPFNSSFTPPSNFRRENWVNMHSMPDSMKSTTDINISLPDN* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0876 342 Gene3D - 136 265 - -
Dod01g0876 342 Pfam Plants and Prokaryotes Conserved (PCC) domain 136 249 IPR005175 -
Dod01g0876 342 CDD DUF296 136 226 IPR005175 -
Dod01g0876 342 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 341 - -
Dod01g0876 342 MobiDBLite consensus disorder prediction 24 43 - -
Dod01g0876 342 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 341 IPR039605 GO:0003680
Dod01g0876 342 SUPERFAMILY AF0104/ALDC/Ptd012-like 134 253 - -
Dod01g0876 342 MobiDBLite consensus disorder prediction 252 311 - -
Dod01g0876 342 ProSiteProfiles PPC domain profile profile. 131 270 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0876 Dod-Chr1 16081266 16084874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0876 10 281 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 55.229 3.32e-95 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0876 - - gmx:100793726 503.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0876 01 16081266 16084874 Dod01g0876 01 16081266 16084874 ECH
Dod01g0876 01 16081266 16084874 Dod07g1782 07 46678408 46684503 PCT