Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0874 ATGAGTGTCAACTCAAGCGGCGGTAGTGGTGGCGGTGGTGGAAGCAACAGCGGCAGCCCATGTGGTGCTTGCAAGTTCTTGAGAAGGAAGTGCGTGCCGGGATGTATCTTTGCTCCGTATTTTGATGCAGAGCAAGGTGCATCCCACTTTGCAGCAGTGCACAAGGTGTTTGGGGCCAGTAATGTCTCCAAACTCCTCCTCAATATTCCTATTCAAAAGAGACTTGATGCAGTGATTACCATTTGTTATGAAGCACAATCACGCCTTAGAGATCCTGTGTATGGTTGTGTAGCTCACATTTTTGCTCTTCAACAACAGGTGTTGGCTTTACAAGCAGAACTCTCATACTTACAAGGCCACCTTGCTACAATGGAGTTACCCCAACCACCACCCGCTCATCCACCACAAGCAGCAGTGGCACCACCTGTTTTCTCGATTGCCGACTTACCAACTGCCACGGCCGCCGCCGCCACCTCGTCTATGCCGGCCACCTTCGATGCATCTTCACTATTTGAACAATCAATGGCCCAATCTCCATGGGCCATGCAGCAGAGGGCCATGATGGACCCACGTCAATACTTGATTGCTGCCCCAATGGCCCCAATTGGTGGTGTTGATCTTCAAACAGTGGCACGTGAGCTCATGCATAGACATGTGACTGCACCAGCTGCACCTCCACCTCCATGCTCCAATGCCTCCTCATCATCTCAATCGCTCTCTTCTAAGTGA 729 0.5117 MSVNSSGGSGGGGGSNSGSPCGACKFLRRKCVPGCIFAPYFDAEQGASHFAAVHKVFGASNVSKLLLNIPIQKRLDAVITICYEAQSRLRDPVYGCVAHIFALQQQVLALQAELSYLQGHLATMELPQPPPAHPPQAAVAPPVFSIADLPTATAAAATSSMPATFDASSLFEQSMAQSPWAMQQRAMMDPRQYLIAAPMAPIGGVDLQTVARELMHRHVTAPAAPPPPCSNASSSSQSLSSK* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0874 242 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 4 220 - -
Dod01g0874 242 MobiDBLite consensus disorder prediction 220 242 - -
Dod01g0874 242 ProSiteProfiles LOB domain profile. 19 121 IPR004883 -
Dod01g0874 242 Pfam Lateral organ boundaries (LOB) domain 20 118 IPR004883 -
Dod01g0874 242 PANTHER LOB DOMAIN CONTAINING PROTEIN 4 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0874 Dod-Chr1 16045652 16049848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0874 23 240 AS2 family AT2G45420 56.034 4.34e-79 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dod01g0874 LOB 3.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0874 K21994 - rcu:8270648 266.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0874 01 16045652 16049848 Dod01g0874 01 16045652 16049848 ECH
Dod01g0874 01 16045652 16049848 Dod07g1785 07 46746884 46751364 PCT