Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0857 ATGAGTTTCCTTCAGGGAATCATCGATTCATTCAGCTCCATCCTCTCTTCTGATCCTCCTTCTTCATCATCATCATCATCATCATCTCAATCTCACACTAATAATTCAACAGCAATGGAAGCTTCTTCTTCTCCTTCTTCTGGTTCGGTTCCGAACGAACGCGTGGCTTTCAAGCTGAAAGGGTACTACGATTTGGCGACTCAGGAGATCGCGAAGGCCGTTCGCGCCGAAGAGTGGGGTTTGGTCGACGACGCTCTCCTTCACTACAAGAACGCCCAGAGGATCCTCCAAGAGGCCAATTCTACCCCCGTCCCTTCCTTCATCACTTCCAGTGAACAAGCAAAAGTGCAATCATATCGTCAGAAGATATCTAAATGGCAGGGCCAAGTTTCTGAGAGATTACGGAGTCTAAGTAGACGAGCAGGTAGCTCATCTGCCAATCAGAGCACTTCAAACCTTGCACAAACTGCTGCAGTTCCAATTAAAACATCAAATGCTAGAAAAAATGTGTTACAAAAGTATCCTCAACAAACAGGTCAGGTGAATAAAGTTGGAAGCCCAAAATCTAGTCAAGCTTCTGGTGCAAATTATGATTCAAAACTGGTTGAAATGATTAATACTGCCATAGTAGATAGAAGTCCTTCTGTTAGATGGGATGATGTTGCTGGGCTTGAGAAGGCGAAGCAAGCTTTAATGGAGATGGTTATTTTGCCAACTAAGAGAAGAGACTTGTTCACTGGTCTTCGAAGGCCAGCTAGAGGATTGCTTCTCTTTGGTCCACCCGGTAATGGAAAGACCATGCTTGCCAAGGCTGTGGCTTCAGAATCAGAAGCAACATTTTTTAATGTCTCTGCAGCTTCATTGACTTCAAAATGGGTGGGTGAAGGCGAAAAACTTGTCCGGACACTATTCATGGTAGCTATATCCAGACAGCCATCTGTAATTTTCATTGATGAGATTGATAGTATAATGTCAACAAGATTGGCAAATGAAAATGATGCCAGCAGACGATTAAAATCTGAATTTCTTATCCAGTTTGATGGGGTGACCTCCAATTCTAATGATATTGTGATTGTAATTGGTGCAACCAACAAGCCACAAGAAATTGATGATGCAGTTCTTAGGAGACTGGTAAAGAGAATATACGTACCTTTACCAGATGAAAATGTTCGAAAACTTCTGCTGAAACACAAGCTCAAGGGTCAAGCATTCTCCTTACCAAGTAGAGATCTGGAAAGGCTTGTAAAAGAGACAGAAGGCTATTCTGGAAGTGATCTGCAAGCCTTGTGTGAAGAAGCTGCAATGATGCCGATTAGAGAACTGGGTTCTGACATTCTTACTGTTAAAGCAAATCAGGTAAGAGGACTGACGTATGAGGATTTCAAGAAGGCAATGTCGGTCATCAGACCAAGCTTAAACAAAAGCAAGTGGGAAGAGCTTGAGCGCTGGAATGAGGAATTTGGCTCTAATTGA 1473 0.4291 MSFLQGIIDSFSSILSSDPPSSSSSSSSSQSHTNNSTAMEASSSPSSGSVPNERVAFKLKGYYDLATQEIAKAVRAEEWGLVDDALLHYKNAQRILQEANSTPVPSFITSSEQAKVQSYRQKISKWQGQVSERLRSLSRRAGSSSANQSTSNLAQTAAVPIKTSNARKNVLQKYPQQTGQVNKVGSPKSSQASGANYDSKLVEMINTAIVDRSPSVRWDDVAGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFNVSAASLTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNSNDIVIVIGATNKPQEIDDAVLRRLVKRIYVPLPDENVRKLLLKHKLKGQAFSLPSRDLERLVKETEGYSGSDLQALCEEAAMMPIRELGSDILTVKANQVRGLTYEDFKKAMSVIRPSLNKSKWEELERWNEEFGSN* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0857 490 PANTHER BNAC04G50250D PROTEIN 4 490 - -
Dod01g0857 490 CDD AAA 240 385 - -
Dod01g0857 490 Pfam AAA+ lid domain 410 442 IPR041569 -
Dod01g0857 490 MobiDBLite consensus disorder prediction 13 50 - -
Dod01g0857 490 PANTHER AAA DOMAIN-CONTAINING 4 490 - -
Dod01g0857 490 ProSitePatterns AAA-protein family signature. 357 376 IPR003960 GO:0005524|GO:0016887
Dod01g0857 490 SMART smart 59 136 IPR007330 -
Dod01g0857 490 Pfam Vps4 C terminal oligomerisation domain 455 488 IPR015415 -
Dod01g0857 490 Gene3D - 52 141 - -
Dod01g0857 490 CDD MIT_spastin 59 137 - -
Dod01g0857 490 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 214 487 IPR027417 -
Dod01g0857 490 MobiDBLite consensus disorder prediction 175 194 - -
Dod01g0857 490 Pfam ATPase family associated with various cellular activities (AAA) 255 385 IPR003959 GO:0005524|GO:0016887
Dod01g0857 490 MobiDBLite consensus disorder prediction 136 156 - -
Dod01g0857 490 Gene3D - 214 484 IPR027417 -
Dod01g0857 490 SMART AAA_5 251 387 IPR003593 -
Dod01g0857 490 Gene3D - 386 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0857 Dod-Chr1 15556715 15563493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0857 214 471 Calmodulin-binding Proteins AT3G56690 40.075 1.22e-48 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0857 K13254 - gmx:100780946 788.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0857 01 15556715 15563493 Dod01g0857 01 15556715 15563493 ECH