Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0818 ATGCAAAATCCAAACCCTGCGCCGCCCTCTCCGGTGGACACCGCCCCGTTCCTCCTCCGCAGCCGCCGATTCCTACGCCGCACCCCGCCTCCTCTCCGCACGGCGGCGCGTCTCTTCCGTCAGGCCTCGGGGCGGCGGATGATGCTCCGGGAGCCCTCCGTGCGCGTCCGCGAGGCGGCGGCGGCGGAGCTGGAGGGACGGCAGAGCGACTGGGCCTACTCCAAACCCGTCGTTGCCGTCGACGTGCTTTGGAACATTGCGATCCTCCTCGTTGGTGTTGTGGTTTTGTTCCTCAGCACAAAGGAAGAGCCTTCTGTTCCCTTAAGGGTTTGGATTGTAGGGTACCTTTCGCAAGGTGTGGTTCACTCTGTGTGTGTTGTTGTGGAGTTTAGGAGGAGGAGGGTGAGGATGAGGATGAGGAGGAGTCAAGAGGGTTCTTTTGTGGGTGGAAGGGAGTGGAGTTTCAGTTCTGAGAGTGATGATGGGGGTTATGATGATTTTGAACAGTACCTGCAGGGTGAGGGTAACAGCATCACAAAACACATTGAGTCAGCAAATACCATGCTCTCATTCATATGGTGGATTGCTGGGTTCTATTGGGTAACTGCTGGTGGCCAGAGTTTGACGAGGGATTCACCTCAGCTTTACTGGCTCTGCATTACATTTCTTGCTTTTGATGTTGTGATTGTTCTGATCTGTGTTGCTGTTGCATGTCTGATTGGTATTGCTGTTTGCTGCTGTCTGCCATGCATACTTGCTATTTTGTATGTAGTGGCAGATCAGGAAGGGGCAAGCAAGGAAGAGATTGACCAGTTGCGAAAATATAAGTTCAAAATGATAAAGGAATCTAACAAAGATGGTGATGCTCCAGAATCTTCTAGAGGAATAATGATGGAATGTGACAGTGAGGCAGCTGCCGAACATGATATTGCCTTAGAAGATGCAGAATGCTGTATCTGCCTTTCTGCTTATGATGATGGTGCTGAACTAAGAGAACTTCCTTGCAACCACCATTTTCATTGCACATGCATTGACAAATGGCTGCTTCTAAATGCTACCTGCCCTCTCTGCAAGTATAACATTTTGAGGACTGGGAACCACCATCAAGAAGTTTGA 1116 0.5072 MQNPNPAPPSPVDTAPFLLRSRRFLRRTPPPLRTAARLFRQASGRRMMLREPSVRVREAAAAELEGRQSDWAYSKPVVAVDVLWNIAILLVGVVVLFLSTKEEPSVPLRVWIVGYLSQGVVHSVCVVVEFRRRRVRMRMRRSQEGSFVGGREWSFSSESDDGGYDDFEQYLQGEGNSITKHIESANTMLSFIWWIAGFYWVTAGGQSLTRDSPQLYWLCITFLAFDVVIVLICVAVACLIGIAVCCCLPCILAILYVVADQEGASKEEIDQLRKYKFKMIKESNKDGDAPESSRGIMMECDSEAAAEHDIALEDAECCICLSAYDDGAELRELPCNHHFHCTCIDKWLLLNATCPLCKYNILRTGNHHQEV* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0818 371 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 371 - -
Dod01g0818 371 Pfam Ring finger domain 316 358 IPR001841 -
Dod01g0818 371 PANTHER TARGET OF ERK KINASE MPK-1 5 371 - -
Dod01g0818 371 SUPERFAMILY RING/U-box 306 363 - -
Dod01g0818 371 ProSiteProfiles Zinc finger RING-type profile. 317 358 IPR001841 -
Dod01g0818 371 CDD RING-H2_RNF111_like 316 360 - -
Dod01g0818 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 365 IPR013083 -
Dod01g0818 371 SMART ring_2 317 357 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0818 Dod-Chr1 14894717 14901174 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0818 5 369 C3H Transcription Factor Family AT1G68070 48.634 1.24e-115 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0818 - - gmx:100785943 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0818 01 14894717 14901174 Dod01g0818 01 14894717 14901174 ECH