Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0808 ATGGCAGAAGCTGAAGCTAGGAAACATGCTTCTTCAACTACAGCCCCTGCTTCTTCCAACAACAGCAACATGGCTCAATCAAACAAACCAACCGTGAAAAGGTTCATTGGGGTGAGGCAAAGGCCATCAGGGAGGTGGGTGGCAGAGATCAAGGACTCATCTCAGCATGTAAGGCTATGGCTTGGTACATATGACACACCAGAAGAAGCAGCAAGGGCCTATGATGAAGCAGCTAGAGCACTACGTGGGGAAAATGCAAGAACCAACTTTGCAACAACAACATCATCATCATTGAACCAACAATTATCTGAAGGGTCACCGCTTTCCAATTATGAAGGAATGAATGGAAGGCATGGATTGAGCTTTGCTTCATTGAAGGCCAAATTGAGCAAGAATTTGCAAAGCATCATGGCAAGGGCTGGTGATCACAACAAGCCATCAAAGAGTAGGGTGAGTGACCATTTCACCTTTGCTAGCATATTCCACCGAAATAGGAGCAATTACCAATACCAAAATGCTCCTGTAGTGGATGTTAAGAACATTGAGAAAGTGGTGCAGCCTAGCATCATAGTTCCACCACATGTTGCGGATCAATCTGAGCCTAATTCTAATCATTGTTCTTGTTGGGAAACATCTAGTGTCTCTGATTGTAGCACTGAGTGGAATATTAATGGGCTTCATAGGCCCAACAAGTTGGACTCATCATGTTCTGATGGGTCAGATTTTGGGGATTTTGGTGTTGGTGATCAAGGTGTGTTGGACCAATTGATGGGGTGGGTTGATAGCCCTGATACATGTGTATTTGGTAGTGGAAGTGATGAGGGATCAAGGAGCAAGAGGTTCAAGGTCTCCTCTTCTGTGCTTGTGCCACCAACTTTCACTGCTTCCCCATATGATTGTGGTTCTCCATATAGTGGTTGTGGCTCTCCATATAACAATTGCTATGGCTCCCCTTATAATGGTTATGGCTCTCAATATAATGGTGGAAAGTGA 993 0.4461 MAEAEARKHASSTTAPASSNNSNMAQSNKPTVKRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGENARTNFATTTSSSLNQQLSEGSPLSNYEGMNGRHGLSFASLKAKLSKNLQSIMARAGDHNKPSKSRVSDHFTFASIFHRNRSNYQYQNAPVVDVKNIEKVVQPSIIVPPHVADQSEPNSNHCSCWETSSVSDCSTEWNINGLHRPNKLDSSCSDGSDFGDFGVGDQGVLDQLMGWVDSPDTCVFGSGSDEGSRSKRFKVSSSVLVPPTFTASPYDCGSPYSGCGSPYNNCYGSPYNGYGSQYNGGK* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0808 330 Gene3D AP2/ERF domain 33 93 IPR036955 GO:0003700|GO:0006355
Dod01g0808 330 CDD AP2 33 93 IPR001471 GO:0003700|GO:0006355
Dod01g0808 330 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Dod01g0808 330 MobiDBLite consensus disorder prediction 11 30 - -
Dod01g0808 330 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 275 - -
Dod01g0808 330 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677
Dod01g0808 330 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Dod01g0808 330 MobiDBLite consensus disorder prediction 1 33 - -
Dod01g0808 330 Pfam AP2 domain 34 83 IPR001471 GO:0003700|GO:0006355
Dod01g0808 330 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 275 - -
Dod01g0808 330 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Dod01g0808 330 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0808 Dod-Chr1 14712421 14713413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0808 34 91 AP2-EREBP Transcription Factor Family AT5G19790 74.138 1.11e-25 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod01g0808 AP2 1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0808 K09286 - gmx:100799444 348.591