Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0804 ATGGGTGTTGGTGGCAATTTCTGGGACCTTCTGAAGCCCTATGCTCGAAACGAAGGTTTTGATTTCTTGAGGAACAAGCGAATCGCTGTGGACCTCTCTTACTGGATTGTTCAGCACGAGACTGCCATCAAGGCTCATCATGTTAGAAAGCCTCACCTCAGACTAACTTTCTTCCGCGCCATCAATCTCTTCTCCAAGTTTGGAGCATTTCCGGTGTTTGTTGTTGATGGGACTCCATCACCATTGAAATCACAAGCTAGGATTGCGAGATTCTTCCGGTCTTCTGGCATTGAATTGACTAGCTTACCAGTGCCTGAAGAAGGTGTTTCAGCTGAGAGGAACCGTTCATTTTCAAATTGTGTTCAACAATGTGTGGAACTTGTTGAGCTACTTGGAATGCCTGTATTAAAGGCTAAAGGAGAGGCTGAAGCACTCTGTGCCCAATTAAACAGTGAAGGTCATGTAGATGCTTGCATCACAGGTGACAGTGATGCATTTCTCTTTGGGGCCAAATGCATTATAAAATGTTTCCGCCCCAATTCCAAAGAACCATTTGAGTGCTACAATATGTCAGACATTGAAGCTGGCCTTGGATTGAAGAGGAAACATTTAATAGCTATCTCTCTTTTGGTTGGAAATGATCATGATATGAATGGTGTTCGAGGGATTGGGCTTGATACTGCTCTTCATTTTGTTCAAGCTTTCAGTGAAGATGATATATTAAATAGATTACATGAGATAGGAAAAGGGAATGCTTCAGAAGTTCTCATTAGCATTAAATCTGAGGACAGTATGGATATGGATGTTAACTCCCCAAATACAAAACAACCTCACTGTTCATTCTGTGGGCATCCTGGCAACAAAAGGGATCATATGAAGTCTTCATGTGAATATTGCATCACAAATGACAACCAAGGTTGCCTGAGAAGACCAGAGGGTTTTAAATGTGATTGCTTCTCCTGTGGTATGAATATGAAACATAAGGGGCAGAAAAGGCTGGAAAATTGGTACACAAAAGTTTGCAACAAGATTGCAAAGGAGCCAAATTTTCCAAAGGATGAAATCATTGATATATATTTATGCAATGACAATGGCTACTTCTCTGCAAATGATGGCCCTCACATCTCATGGGAAAGACCCAATATTGAGATGCTGATTGATTTTTTAAACTTCCATCAGAACTGGAATCCATCCTACATTCGAAAGCTGATGTATCCTATGATGTCCACCATCTTTTTGAGAGATATGGCTACAAGTACAGTAGAAAATTTGTTATTTGGGCAATATGAGTTTGATTCTTTAGTACGTGTGAAGATAAGATATGGATATCAGTTTTATGTGGTCAAGTGGAAACGTGCAATGGATAACATTGCCTGTACAATTCCATCAAATGAATCTGACATGCCACATGATGTTAGAGAGCTTGAGGAAACGGTGGATCTACTGGATGACTGTGATGTTCCCGAGATTCAAGAGGATGATGGCTGTAGTTTCCTGTTGACAGATGAAAATATGGACCTTGTAGGGGCTGCTTTTCCAGAAGAAGTTAAAAGGTTTTGGCAGGAACAGGAAGTGAAGGATTTGAAAAGAAGAAAGAGCTCAAAACAAAATGAAGTATCAGCATCACCAAGCTCAAAAGGCATCCAGCTGAACATTACAGAGTACTTCCCTTCAACCAAAGTTAAAAATCAATCAAAGCAAGGAGAAGAGTCATCCAAGAACTCTGATAGCCGAGGTAGTGGAGCCTCGAAAGTGAAATGGAAAGAGTCAAGCTCAAACCTCTCAAAATCCGTGAGGCGCCGCCTTTTATTTGACTAG 1818 0.4092 MGVGGNFWDLLKPYARNEGFDFLRNKRIAVDLSYWIVQHETAIKAHHVRKPHLRLTFFRAINLFSKFGAFPVFVVDGTPSPLKSQARIARFFRSSGIELTSLPVPEEGVSAERNRSFSNCVQQCVELVELLGMPVLKAKGEAEALCAQLNSEGHVDACITGDSDAFLFGAKCIIKCFRPNSKEPFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDMNGVRGIGLDTALHFVQAFSEDDILNRLHEIGKGNASEVLISIKSEDSMDMDVNSPNTKQPHCSFCGHPGNKRDHMKSSCEYCITNDNQGCLRRPEGFKCDCFSCGMNMKHKGQKRLENWYTKVCNKIAKEPNFPKDEIIDIYLCNDNGYFSANDGPHISWERPNIEMLIDFLNFHQNWNPSYIRKLMYPMMSTIFLRDMATSTVENLLFGQYEFDSLVRVKIRYGYQFYVVKWKRAMDNIACTIPSNESDMPHDVRELEETVDLLDDCDVPEIQEDDGCSFLLTDENMDLVGAAFPEEVKRFWQEQEVKDLKRRKSSKQNEVSASPSSKGIQLNITEYFPSTKVKNQSKQGEESSKNSDSRGSGASKVKWKESSSNLSKSVRRRLLFD* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0804 605 Gene3D - 199 261 - -
Dod01g0804 605 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 199 414 IPR036279 -
Dod01g0804 605 CDD PIN_GEN1 2 203 - -
Dod01g0804 605 PANTHER FLAP ENDONUCLEASE GEN-LIKE 1 1 591 - -
Dod01g0804 605 Pfam XPG I-region 132 214 IPR006086 GO:0004518
Dod01g0804 605 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 204 219 IPR006084 -
Dod01g0804 605 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Dod01g0804 605 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Dod01g0804 605 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 128 145 IPR006084 -
Dod01g0804 605 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 149 169 IPR006084 -
Dod01g0804 605 MobiDBLite consensus disorder prediction 574 598 - -
Dod01g0804 605 SMART xpgineu 129 199 IPR006086 GO:0004518
Dod01g0804 605 MobiDBLite consensus disorder prediction 557 605 - -
Dod01g0804 605 Pfam XPG N-terminal domain 1 90 IPR006085 GO:0004518
Dod01g0804 605 Gene3D - 3 198 - -
Dod01g0804 605 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 591 IPR006084 -
Dod01g0804 605 SUPERFAMILY PIN domain-like 6 214 IPR029060 -
Dod01g0804 605 SMART xpgn3 1 97 IPR006085 GO:0004518
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0804 16 360 Core DNA Replication Machinery Family AT5G26680 26.842 3.76e-18 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0804 K15338 - gmx:100779848 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0804 01 14651491 14656663 Dod01g0804 01 14651491 14656663 ECH