Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0773 ATGAACAATAGAGCGAGGTACCCACCTGGGATCGGGTTAGGTCGCGGTGGTGGTGGAAATGGTGGTTATAACAACCAAGGGTTTCAACCAAGGCCACAACATCAACAACAGTATGTGCAGAGGCACGTGGTTCAGCATCAACATCCTCAGCAGTATCAGCAGCATCATCATCATCAGCAGAATCAACAGCAACATCATCATCAACAACAACAGCAGCAGCCGCAACAGTGGTTGAGAAGGACACAGTTGGGGGGTGGTGCTGGTGGAACTGACAACAATGTTGTCGAGGAGGTTGAAAAGACTGTACAGTCTGAAGCTGTCGACTCAAGTTCACAAGATTGGAAGGCAAGACTAAAGATTCCACCAGCTGATACACGCTATAAGACTGAGGACGTGACAGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCAATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCAAGGGCTAAGAATGGAACAGGCAAAACAGCTGCATTTTGTATTCCTGCGTTGGAAAAAATTGATCAAGATAGTAACGTTATTCAAGTTGTTATACTGGTACCGACACGAGAATTGGCTTTGCAGACATCTCAAGTGTGTAAAGAACTTGGAAAGCATTTGAAAATTCAGGTTATGGTCACAACAGGTGGTACCAGCCTAAAAGATGACATTATGCGTTTATATCAACCAGTTCATTTACTGGTTGGAACTCCAGGAAGAATTTTAGATCTTGCAAAGAAGGGTGTTTGCATTATGAAGGATTGCTCTATGCTAGTTATGGACGAGGCTGATAAGCTTCTATCCCCAGAATTTCAACCTTCAGTTCAGCAGCTGATTCAATTTCTTCCTGCAACCCGTCAAATCCTGATGTTTTCGGCAACTTTTCCTGTTACTGTAAAGGACTTCAAAGATAGATATCTTCGTAAGCCATATATCATTAACCTTATGGATGAGTTAACTCTGAAGGGTATTACGCAATATTATGCATTTGTGGAGGAGAGACAGAAAGTTCACTGCCTAAATACTCTTTTCTCTAAGCTGCAAATAAATCAGTCAATCATCTTTTGCAATTCAGTCAATCGGGTTGAACTCCTTGCCAAGAAAATCACAGAACTTGGGTATTCTTGTTTCTATATTCATGCAAAGATGTTGCAAGACCACCGTAATAGAGTATTTCATGATTTCCGCAATGGTGCATGCAGGAATCTAGTTTGTACCGATCTTTTTACTAGGGGTATAGACATCCAAGCAGTCAATGTTGTTATTAACTTTGATTTTCCAAAGAACGCAGAAACTTATCTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTTGGTTTAGCAGTGAACTTGATTACATATGAGGATCGCTTCAATTTATATAGGATTGAACAAGAACTCGGCACTGAAATAAAACAAATTCCACCTCACATTGATCAGGCGATATATTGCCGGTGA 1539 0.4152 MNNRARYPPGIGLGRGGGGNGGYNNQGFQPRPQHQQQYVQRHVVQHQHPQQYQQHHHHQQNQQQHHHQQQQQQPQQWLRRTQLGGGAGGTDNNVVEEVEKTVQSEAVDSSSQDWKARLKIPPADTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDSNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCIMKDCSMLVMDEADKLLSPEFQPSVQQLIQFLPATRQILMFSATFPVTVKDFKDRYLRKPYIINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0773 512 Gene3D - 343 512 IPR027417 -
Dod01g0773 512 CDD SF2_C_DEAD 350 479 - -
Dod01g0773 512 SMART helicmild6 389 470 IPR001650 -
Dod01g0773 512 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 349 509 IPR001650 -
Dod01g0773 512 Pfam DEAD/DEAH box helicase 163 327 IPR011545 GO:0003676|GO:0005524
Dod01g0773 512 SMART ultradead3 157 353 IPR014001 -
Dod01g0773 512 MobiDBLite consensus disorder prediction 1 92 - -
Dod01g0773 512 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 169 339 IPR014001 -
Dod01g0773 512 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 5 512 - -
Dod01g0773 512 MobiDBLite consensus disorder prediction 22 80 - -
Dod01g0773 512 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 12 5 512 - -
Dod01g0773 512 Gene3D - 94 342 IPR027417 -
Dod01g0773 512 CDD DEADc_DDX6 140 340 - -
Dod01g0773 512 Pfam Helicase conserved C-terminal domain 364 470 IPR001650 -
Dod01g0773 512 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 285 293 IPR000629 -
Dod01g0773 512 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 138 166 IPR014014 GO:0003724
Dod01g0773 512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 492 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0773 Dod-Chr1 14136087 14142831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0773 138 509 Eukaryotic Initiation Factors Gene Family AT3G19760 37.968 1.57e-93 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0773 K12614 - tcc:18614173 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0773 01 14136087 14142831 Dod01g0773 01 14136087 14142831 ECH