Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0750 ATGACTGTGGTGAGTCCTGTGCCTGCAACTACACAACGAATCGATTCTGTGAGGTTTAACAATAGGGTGATGGCAAGTAGGGGAGAAGCTGTGGAGGAGCCTAAGCAGCGTGTGGTTGATGAACCAATCTACGTTGCTGTGTCAAAGGATGTGAAAGAGAGCAAACTGAATCTGGTTTGGGCAATTCAGAACTCTGGTGGAAGGAGGATTTGCATCCTTCATGTTCATGTCCCTGCAACCATGATCCCCTTGTTGGGTGCTAAATTCCCAGCAAGTTCACTCAAAGAGCAGGAGGTTCAAGCATACCGGGAAAATGAAAGGCAAAGCATGAATAAGACTCTGGATGACTATCTTCTTATCTGTCAACGGATGGGGGTGCGAGCAGAGAAAGTGTATATTGAAATGGACAACATTGAAAAAGGAATCGTAGAACTTGTCTCCCAACGTGGCATCTGGCGGCTTGTTATGGGAGCAGCATCTGATCGGTCCCATTCTAGGAGAATGATGGACCTTAGATCTAAGAAAGCCATATATGTACGTGAACATGCTCCTGCTTTTTGTCATGTACAGTTTATTTGCAAAGGGCACCTTATACACACAAGGGATCGCTGTTCAGATGAAGATAATGTAGTTGCATCTCCTTTGGTGCAGCAAGTGCCAAACGCTGAACCTGAACATTTACTACCCTTAAGATCTCAATCGATTGCTCTGGGGCAAAACTATCGAGCAAATCAAACCAATCAAAGTCTAGAGTTATTTCGCAGAGTAAGGTCTGCCAATGATGGGCATGTAGGGGGCATGTTGGCTGTTTCTTCTCCAGATAACACTGAAGGCTTTTCAACTCCACTAAACAGGATAGGTGCAGATCTGAGTTCTGATGAGTCAGATAGGATGTCAAGGATGAGTCTTTCAGCTTTGTCAGTATGTTCCGATGGTGGTACCCCAAATTTGATAAGTGAGAGCAGTGAGAATGTAGTAGAGTTGACTTTGAGTCATGGGATCAAAGCGGATCTTCACCATTCTTCTCCTCCTAGTGTACTGGATGGAGGAATGAATGATACATTGATTGATCAACTTGAACTGGCTATGGCCGAGGCTGAGAATGCTACACGAAATGCATATCAAGAAGCAATTAGGCGTGGGAAAGCTGAAAAGGAGGCCTTTGAAGCTGTGCGCAGGGCTAAAGCCTCTGAAAACTTATATATGGAGGAGTTGAACCTGAGGAAAATGGCTGAGGAAGAACTACAAAAAGAAAAGGAAGGAGTTGAAAATATGAAGAGCCAGAGAGACAAGGTGATCGAAGAACTCCAAATTGCCCTAGATCAGAAGTCATCACTAGAGAGTCAAATTGCATCATCTGAACTTACAATAAAGGAGTTGGAGCAGAAGATTATATCTGCTGTGGATCTGTTGCAAAGCTACAAGAATGAACGAGATGAGTTGCAGACGCAGTGTGATATTGCATTGAAAGAGGCTGCGGAGTTGAGGAAGAAACAAGGAGAGGGCTCCAGCACACATGCGCCTCAGTTGTTCTCAGAATTCTCTTTTCTAGAGATTGAACAAGCAACAAATAAGTTTGATCAATCCCAAAAGATTGGAGAAGGTGGATATGGAAGTATATTTAAAGGTATCTTGCGTCACACTGAGGTGGCTATAAAAATGTTGAACCCCAACAGCATGCAAGGACCGTTGGAGTTTCAACAGGAGGTTGATGTATTGAGCAAGTTAAGGCATCCAAATCTTATCACACTTGTAGGAGCCTGCCCAGAATCCTTTACACTTGTCTACGAGTATTTACCAAATGGAAGCCTTGAAGACCGTCTCACCTGCAAGGATAACACGCCTCCATTATCATGGCAAACTCGGATTCGCATTGCCGCAGAACTGTGCTCAGCTCTCATCTTTCTCCATTCTAGTAAGCCGCACAGCGTAGTGCATGGTGACTTGAAGCCCTCCAATATTCTCCTCGATGCAAACCTTGTTAGCAAGCTCAGTGACTTTGGAATCTGTCGCATATTATCTCATCAGGAGGGTTCAAGTAATAGCACTACACAGTTGTGGAGAACTGACCCAAAGGGGACTTTTGTCTACATGGATCCTGAGTTCCTTGCTTCAGGGGAAATTACTCCTAAATCAGATGTTTATTCCTTTGGAATCATATTGTTGAGATTGTTGACAGGGAGACCAGCCTTGGGAATAACAAAGGAAGTGTCGTATGCATTGGAGACCAGAAAGCTGAAATCCCTATTGGATCCTTTGGCTGGAGACTGGCCATTCGTGCAGGCTGAACAGCTGGCTCGCTTGGCCATGAGGTGTTGTGAGATGAGTAGAAAGAGCCGGCCGGACCTTTATTCAGACGTATGGAGGATATTGGACCCAATGAGGGCTTCTTCTGGAGGCACAAGCTCCTTTGGACTAAGCTCTGAAGGGCTTTACCAACAAATCCCTTCATATTTCATTTGTCCAATCTTCCAGGAAGTCATGCGAGATCCACATGTAGCTGCAGATGGTTTCACCTATGAAGCTGAGGCCATAAGAGGGTGGCTTGACAGTGGCCATGATGCTTCACCCATGACGAATTCTAATCTTGCACATCGCAATCTTGTTCCGAACCGCGCGCTTCGGTCCGCAATCCAAGACTGGCTTCAAAGTCCCTGA 2658 0.4515 MTVVSPVPATTQRIDSVRFNNRVMASRGEAVEEPKQRVVDEPIYVAVSKDVKESKLNLVWAIQNSGGRRICILHVHVPATMIPLLGAKFPASSLKEQEVQAYRENERQSMNKTLDDYLLICQRMGVRAEKVYIEMDNIEKGIVELVSQRGIWRLVMGAASDRSHSRRMMDLRSKKAIYVREHAPAFCHVQFICKGHLIHTRDRCSDEDNVVASPLVQQVPNAEPEHLLPLRSQSIALGQNYRANQTNQSLELFRRVRSANDGHVGGMLAVSSPDNTEGFSTPLNRIGADLSSDESDRMSRMSLSALSVCSDGGTPNLISESSENVVELTLSHGIKADLHHSSPPSVLDGGMNDTLIDQLELAMAEAENATRNAYQEAIRRGKAEKEAFEAVRRAKASENLYMEELNLRKMAEEELQKEKEGVENMKSQRDKVIEELQIALDQKSSLESQIASSELTIKELEQKIISAVDLLQSYKNERDELQTQCDIALKEAAELRKKQGEGSSTHAPQLFSEFSFLEIEQATNKFDQSQKIGEGGYGSIFKGILRHTEVAIKMLNPNSMQGPLEFQQEVDVLSKLRHPNLITLVGACPESFTLVYEYLPNGSLEDRLTCKDNTPPLSWQTRIRIAAELCSALIFLHSSKPHSVVHGDLKPSNILLDANLVSKLSDFGICRILSHQEGSSNSTTQLWRTDPKGTFVYMDPEFLASGEITPKSDVYSFGIILLRLLTGRPALGITKEVSYALETRKLKSLLDPLAGDWPFVQAEQLARLAMRCCEMSRKSRPDLYSDVWRILDPMRASSGGTSSFGLSSEGLYQQIPSYFICPIFQEVMRDPHVAADGFTYEAEAIRGWLDSGHDASPMTNSNLAHRNLVPNRALRSAIQDWLQSP* 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0750 885 SMART serkin_6 526 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g0750 885 Coils Coil 352 376 - -
Dod01g0750 885 Gene3D Phosphorylase Kinase; domain 1 494 598 - -
Dod01g0750 885 CDD RING-Ubox_WDSUB1_like 819 860 - -
Dod01g0750 885 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 813 884 IPR013083 -
Dod01g0750 885 PANTHER OS02G0152300 PROTEIN 20 883 - -
Dod01g0750 885 SUPERFAMILY Protein kinase-like (PK-like) 502 783 IPR011009 -
Dod01g0750 885 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 60 166 - -
Dod01g0750 885 Pfam U-box domain 815 884 IPR003613 GO:0004842|GO:0016567
Dod01g0750 885 ProSiteProfiles Protein kinase domain profile. 526 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g0750 885 CDD STK_N 42 195 - -
Dod01g0750 885 ProSitePatterns Protein kinases ATP-binding region signature. 532 553 IPR017441 GO:0005524
Dod01g0750 885 ProSitePatterns Serine/Threonine protein kinases active-site signature. 644 656 IPR008271 GO:0004672|GO:0006468
Dod01g0750 885 Pfam Protein kinase domain 527 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g0750 885 PANTHER U-BOX KINASE FAMILY PROTEIN 20 883 - -
Dod01g0750 885 SMART Ubox_2 818 881 IPR003613 GO:0004842|GO:0016567
Dod01g0750 885 ProSiteProfiles U-box domain profile. 814 885 IPR003613 GO:0004842|GO:0016567
Dod01g0750 885 Gene3D HUPs 43 189 IPR014729 -
Dod01g0750 885 Coils Coil 408 498 - -
Dod01g0750 885 SUPERFAMILY RING/U-box 807 883 - -
Dod01g0750 885 Gene3D Transferase(Phosphotransferase) domain 1 599 797 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0750 Dod-Chr1 13473488 13480268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0750 1 883 U-box Gene Family AT2G45910 53.683 0.0 901
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Dod01g0750 Pkinase 2.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0750 - - gmx:100810508 1340.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0750 01 13473488 13480268 Dod01g0750 01 13473488 13480268 ECH
Dod07g1952 07 50054134 50055365 Dod01g0750 01 13473488 13480268 ECH
Dod01g0750 01 13473488 13480268 Dod07g1951 07 50050655 50054097 PCT