Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0729 ATGTTTAGTAATGGGGAACCTGTGGATTTGTATAAGCTCTTCATGGTGGTGAAGGAGAAAGGTGGCTATGATGCTGTTTGTAAGAACAAGTTGTGGGATTTAGTTGGGGAAGAATATGGTTTGGGTGTGAAGGTTGGTTCCTCCGTGGAAGTGGTTTATAGTAAGTACTTGAGTACTCTCGAGACATGGCTAAAGAATGTTGCTGATAGTAAGTTCCCTGAGTGTGGTTTAGTGGATGATAGAGTTAATTTTTGTAAGAAGTTGATGGAAGTGCAAACTGAACTCTTGTTGGATGATTACAGCGAGGAAGGTGCGGGAGATGAAATCGTTAGGGTATGTGACTTCCTAGATGGGAGGAAGTTGTGTGGCAGTAATAGAGTAAGGGGCATTAATCCGGAGCTCAATGGGGCCAAGAAAGTTCACAATGGAGGACTTGTTGATTTGAGTGTGCAGGACCATAGGACTAATGAGCCTAGTATTGGAAACTTTTGCAGCCATAACTATGCGATGGATATAATGGACCATTTGAATGAAAATGAGACAGCAGCGGTTGTTATATCTGATGCAGTAAACAGCATGCCTGGACTATCTGATGGTAGCAAGACATGTGACAATGATGATGACGATGGTGTCGTGGTATTGGATCTATGTAGTGTTAATAAAGAGAGCTTTGGTCGAAAGAGGAAAAGGGAGTCTGTATCGGAAATGCTAGGCTGGGTTACTGGTATTGCTAAGGATCCTTGCGATCCTGCCTCTGGTTCAATGCCTGAAAAATCAAAGTGGAAGTCTTACGCTAGTGAGGTGATGTGGAAGCAGATTTTATTGTTTCGGGAAGCTGTGTTTCTGAAAAGAGGCTCTGAATCAAGCAGTGAACACCCTAGTTGGCAGGGTCAGAAGATGCATCCTTGCATGTATGATGATCACCGTGAGGTAAACTACAATTTTAGAGAGAGGTTGAAATGTGACAAGAGGCTTTTATTGGGAAAATCCACATCTGGTGATGTCTCTTCCAATTCATCTGAGGGAACACAGGGAGATTTGGAGAGAAATGACTGTGTGCCCATCCCTCTTGGGCCATCCCATCAAGCCGAAGTGCCGGAATGGACTGGCATGACTGTTGAGAGTGACCCTAAGTGGTTGGGAATCCAAATATGGTCATCAGAAAATGTAAACTCCAAAGTTATTGAAAGGGATCCTATTGGAGCAGGAAGAAAAGATTCATGTGGCTGCCGAGAAAGAGGTTCTGTCGATTGTGTCCGACTCCACATTGCTCAGGAGAGGGCTAAAGTAAAGTCGGAATTGGGTGTGGCTTTTTATCTTTGGAATTTACACAAGGTAGGTGAAGATGTTAGCCGTTCGTGGACAGAAACTGAGCAGAAGAAGTTCAAGGATGTGGTGAAATCAAACCCTCTTTCACTTGAGAAATGTTTTTGGGATGAACTTTTTAGATCATTTCCTAAGAAGAGCAGGGAAGATTTAGTAAGCTACTACTTCAACGTCTTTCTTTTGCAGCGCAGAGGATACCAGAACAGGAATACTCCGAATGACGTTGACAGCGATGATGATGAATCAGAATATGGACCACAGAAGAATTTTTTTGGAAATCAAACACATAATTCACGCAGCTTCACCTTATTATCACCCAAAAAGCCTCAAACAAAGGGAACATAG 1671 0.4291 MFSNGEPVDLYKLFMVVKEKGGYDAVCKNKLWDLVGEEYGLGVKVGSSVEVVYSKYLSTLETWLKNVADSKFPECGLVDDRVNFCKKLMEVQTELLLDDYSEEGAGDEIVRVCDFLDGRKLCGSNRVRGINPELNGAKKVHNGGLVDLSVQDHRTNEPSIGNFCSHNYAMDIMDHLNENETAAVVISDAVNSMPGLSDGSKTCDNDDDDGVVVLDLCSVNKESFGRKRKRESVSEMLGWVTGIAKDPCDPASGSMPEKSKWKSYASEVMWKQILLFREAVFLKRGSESSSEHPSWQGQKMHPCMYDDHREVNYNFRERLKCDKRLLLGKSTSGDVSSNSSEGTQGDLERNDCVPIPLGPSHQAEVPEWTGMTVESDPKWLGIQIWSSENVNSKVIERDPIGAGRKDSCGCRERGSVDCVRLHIAQERAKVKSELGVAFYLWNLHKVGEDVSRSWTETEQKKFKDVVKSNPLSLEKCFWDELFRSFPKKSREDLVSYYFNVFLLQRRGYQNRNTPNDVDSDDDESEYGPQKNFFGNQTHNSRSFTLLSPKKPQTKGT* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0729 556 SUPERFAMILY ARID-like 4 73 IPR036431 GO:0003677
Dod01g0729 556 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 554 - -
Dod01g0729 556 MobiDBLite consensus disorder prediction 331 346 - -
Dod01g0729 556 MobiDBLite consensus disorder prediction 331 350 - -
Dod01g0729 556 Gene3D - 1 73 IPR036431 GO:0003677
Dod01g0729 556 Pfam ARID/BRIGHT DNA binding domain 4 60 IPR001606 GO:0003677
Dod01g0729 556 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Dod01g0729 556 CDD SANT 453 501 IPR001005 -
Dod01g0729 556 SMART ELM2_2 355 405 IPR000949 -
Dod01g0729 556 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 1 554 - -
Dod01g0729 556 MobiDBLite consensus disorder prediction 511 556 - -
Dod01g0729 556 CDD ARID 4 61 - -
Dod01g0729 556 SMART bright_3 1 66 IPR001606 GO:0003677
Dod01g0729 556 MobiDBLite consensus disorder prediction 529 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0729 Dod-Chr1 13151316 13156114 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Dod01g0729 ARID 1.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0729 - - adu:107485899 800.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0729 01 13151316 13156114 Dod07g1963 07 50190941 50195303 PCT