LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod01g0727	ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTCATCTGCATGGAACACCAGTGTATTACTATTGCCCACCAACTTTGGAAGAGCACGAGTCCTTAACATCTAATGATGGTACGGCTGCTTCACTCACTGCTGGATTGCTGGTTGCTTTGAACCTGGACGCATCCACCCCTGATACTTTCCAGCCCCCTCCTGCACCTCTGCCTTATGATATGGTCTTAGGAGGTTGTGCATCAACAGATTCTGAGTCTGGCAGAGAAACAGTTAGTGGTAGTAGTTTTGAAACTTTGATTGCATGTGAAGATGTCAAAGAATCAGATTGTAAAGTGCAAGCCAACTCTCCACCTATATCTCCAAAGAAGGTAGAGCTATCAAAATCAAATCAGACTCAAGCACTAGTAACAGAAGAAGAGGATGGTTGTCCAATTTGTCTTGAAGAATATGATGTTGAGAATCCAAAAAATCTGACAAAATGCGAACACCACTTTCACCTATCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTGCTGTCCTATCTGTGATCAGGAGATGATATTTTGA	561	0.4296	MGGCCCSARKPHLHGTPVYYYCPPTLEEHESLTSNDGTAASLTAGLLVALNLDASTPDTFQPPPAPLPYDMVLGGCASTDSESGRETVSGSSFETLIACEDVKESDCKVQANSPPISPKKVELSKSNQTQALVTEEEDGCPICLEEYDVENPKNLTKCEHHFHLSCILEWMERSDCCPICDQEMIF*	187

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod01g0727	186	PANTHER	ZINC FINGER, RING/FYVE/PHD-TYPE	1	186	-	-
	Dod01g0727	186	SMART	ring_2	140	180	IPR001841	-
	Dod01g0727	186	ProSiteProfiles	Zinc finger RING-type profile.	140	181	IPR001841	-
	Dod01g0727	186	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	117	185	IPR013083	-
	Dod01g0727	186	Pfam	Ring finger domain	140	180	IPR001841	-
	Dod01g0727	186	SUPERFAMILY	RING/U-box	132	184	-	-
	Dod01g0727	186	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED	1	186	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod01g0727	Dod-Chr1	13117652	13121929	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod01g0727	1	186	C3H Transcription Factor Family	AT4G00335	59.677	1.39e-75	223

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod01g0727	-		-	gmx:100792561	350.517

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod01g0727	01	13117652	13121929	Dod07g1965	07	50226024	50229956	PCT