Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0697 ATGGAAGGAGAGAGAGACGCAGACGCAAACGGCGAAAAACCGAACAACGAGTTGGACGAGTCATCAACTCGTCCCGAGGAAGGCAATGAAGAAGAAGAAGAAGAACCCAAGCCGGTGGAGGAAATCCAGCGAGTCATCGAATCGGTGGCTCAATTCGGCGAGTACCGGAGGACGCAGAGGAAAGAATGCCACAACCTCGTTCGCCGCTTCAAGCTCATGTTGCCCATCATCGAGGAGCTTCGGGAACTCCCTGAACCCATGCCGGAAAACGGCACGGCGTGGTTGAGGAACCTCAGGGACGCTCTCTTGTTTGCCAAGGAGGTGTTGAGGTTGTGCAGCGAAGGAAGCAAGATTCATCTCGCAATGGAGGGCGAGGCGGTTATGATAAAGTTTCAGGGCGCTTATGAAAAGATGAGCCAAGCGTTTGAAGGTGTACCTTGCGAGGAATTGGGGATATCGGATGAAGTCCAAGAACAGTTGGAGCTTCAAAGTGTGGAGAATCTCAAGACAGAAACTGTGGCGGTTAGGAAACTTGCTGCAGAAAGAAAAAGGCAACAAGCAGAGAACACCCAACGAATAATTGGCCTTCTTAACAAGTTCAAACGAATTGCAGGCTTGGAAGAAACCAGTGTCCTTAATGATCCTGTCATAACTAAAATTCTTGATAAGAGCATATCTTTGGTCATCCCTCATGAGTTTCTCTGCCCAATAACACTAGAAATCATGACAGATCCTGTTATTATTGCAAGTGGACAGACATATGAAAGGGAAAGCATAGAGAAGTGGTTCCAATCAAACCATGACACATGCCCAAAGACCAGGCAACCTCTTGCACACTTGCAACTAGCACCAAACTGTGCCTTAAAGAACTTGATTGCTGAGTGGTGTGAGAAAAACAACTTCAAATTACCTAAGAAATACAAGTCTTCAGGTAAAGCAAGCTCCCCCATTGAGAACAAAGAGGAAATCCCATCATTGGTTGAGAGCCTATCATCAATTCACTTAGAAGAGCAAAGAAAAGCTGTGGAGAATATCCGAATGGTATCAAAAGAAAGCCCTGAGAACAGAATCTTGGTTGCTGAGCATGGAGGAATACCACCCTTGGTGCAAATCTTGTCCTATCCAGATTCAAAAATACAAGAGCATGCTGTGACAGCACTACTAAATTTATCAATTGATGAAGGTAACAAGAGGCTTGTATCCAAAGAAGGTGCTATTCCAGCTATTATAGAAGTGCTGGAGAATGGTAGTACAGTGGCTAAAGAAAATTCTGCTGCAACCTTGTTTAGCTTGTCAATGCTTGATGAAAATAAAGAGCTTGTGGGTCTGTCAAATGGAATTCCACCATTGGTAAAATTGTTGCAGAATGGGACAGTTAGAGGGAAGAAAGATGCAATTACAGCACTCTTTAGCTTGTCCCTTAACCATGCAAACAAAGGTAGGGCAATTAATGCTGGAATTGTGACACCACTGCTTCAATTGCTCAAGGACAAAAACTTGAACATGATTGATGAGGCACTCTCAATTCTATTACTCCTTGGGTCAAATCAAGAAGCAAGGCAAGAGATTGGACAGCTCTCATTCATTGAGATTCTTGTTGGGTTCATGAGGGAAGGAACCCCAAAGAACAAGGAATGTGCAGCTGCTGTGCTTTTAGAATTGTGTTCAAATAACTATTCATTTATACTTGCAGCACTTCAGTTTGGAGTGTATGAGCATTTGATTGATATGAAGCAATGTGGAACGAATAGAGCGCAGAGGAAAGCAAATGCAATCTTAGACCTTATAAGCAGGAGCGAGCAAATTTGA 1809 0.4389 MEGERDADANGEKPNNELDESSTRPEEGNEEEEEEPKPVEEIQRVIESVAQFGEYRRTQRKECHNLVRRFKLMLPIIEELRELPEPMPENGTAWLRNLRDALLFAKEVLRLCSEGSKIHLAMEGEAVMIKFQGAYEKMSQAFEGVPCEELGISDEVQEQLELQSVENLKTETVAVRKLAAERKRQQAENTQRIIGLLNKFKRIAGLEETSVLNDPVITKILDKSISLVIPHEFLCPITLEIMTDPVIIASGQTYERESIEKWFQSNHDTCPKTRQPLAHLQLAPNCALKNLIAEWCEKNNFKLPKKYKSSGKASSPIENKEEIPSLVESLSSIHLEEQRKAVENIRMVSKESPENRILVAEHGGIPPLVQILSYPDSKIQEHAVTALLNLSIDEGNKRLVSKEGAIPAIIEVLENGSTVAKENSAATLFSLSMLDENKELVGLSNGIPPLVKLLQNGTVRGKKDAITALFSLSLNHANKGRAINAGIVTPLLQLLKDKNLNMIDEALSILLLLGSNQEARQEIGQLSFIEILVGFMREGTPKNKECAAAVLLELCSNNYSFILAALQFGVYEHLIDMKQCGTNRAQRKANAILDLISRSEQI* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0697 602 SMART Ubox_2 232 295 IPR003613 GO:0004842|GO:0016567
Dod01g0697 602 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 363 405 IPR000225 GO:0005515
Dod01g0697 602 Gene3D - 296 422 IPR011989 -
Dod01g0697 602 Pfam Armadillo/beta-catenin-like repeat 352 391 IPR000225 GO:0005515
Dod01g0697 602 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 159 600 - -
Dod01g0697 602 Pfam U-box domain 229 299 IPR003613 GO:0004842|GO:0016567
Dod01g0697 602 SMART arm_5 352 392 IPR000225 GO:0005515
Dod01g0697 602 SMART arm_5 475 515 IPR000225 GO:0005515
Dod01g0697 602 SMART arm_5 393 433 IPR000225 GO:0005515
Dod01g0697 602 SMART arm_5 434 474 IPR000225 GO:0005515
Dod01g0697 602 SMART arm_5 516 556 IPR000225 GO:0005515
Dod01g0697 602 MobiDBLite consensus disorder prediction 1 23 - -
Dod01g0697 602 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 445 487 IPR000225 GO:0005515
Dod01g0697 602 SUPERFAMILY RING/U-box 228 304 - -
Dod01g0697 602 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 29 162 - -
Dod01g0697 602 MobiDBLite consensus disorder prediction 1 41 - -
Dod01g0697 602 Gene3D - 423 601 IPR011989 -
Dod01g0697 602 PANTHER U BOX DOMAIN-CONTAINING 29 162 - -
Dod01g0697 602 SUPERFAMILY ARM repeat 317 598 IPR016024 -
Dod01g0697 602 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 404 446 IPR000225 GO:0005515
Dod01g0697 602 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 223 295 IPR013083 -
Dod01g0697 602 PANTHER U BOX DOMAIN-CONTAINING 159 600 - -
Dod01g0697 602 ProSiteProfiles U-box domain profile. 228 302 IPR003613 GO:0004842|GO:0016567
Dod01g0697 602 Gene3D - 37 146 IPR036537 GO:0007166
Dod01g0697 602 CDD RING-Ubox_PUB 233 275 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0697 Dod-Chr1 12142432 12146115 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0697 39 602 U-box Gene Family AT5G42340 58.075 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0697 - - gmx:100777362 867.455