Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0648 ATGGAATTCGATGCTGCTGCTGCTGCTGCAATTCCCATCTCACCAGAATACATCATCCCTCAAGATGCAATGTGGCAAATGAACTTGAGGTCAAGTGAAACAATGGAACCTGGACCTTATCCTGAGCATCCAGGAGAACCAGATTGTTCATATTACATCAGAACAGGACTTTGTAGATTTGGAGCAACATGTCGATTTAACCATCCTCCTAACAGGAAGCTGGCTATTGCTGCAGCACGGATGAAAGGAGAGTTCCCAGAAAGGATAGGGCAGCCAGAATGTCAGTATTATCTGAAGACAGGAACTTGCAAATTTGGGGCCACATGCAAGTTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTTGCTTTAAATATTTTAGGCTATCCACTCCGCCCAAATGAGCCTGAATGTGCTTATTATTTAAGAACTGGACAATGCAAATTTGGGAACACTTGCAAATTCCACCATCCTCAACCAAATAATATGGTTCTTTCAATGCGTGGTTCTCCTGTTTATCCTACTGTCCATTCTCCAACTACACCAGGTCAGCAGTCATATGCAGCAGGAATAACAAATTGGTCTAGTTCATCCTATATTCCTAGTCCACGCTGGCAAGGTCCTTCGAGTTATGCACCTTTAATTCTACCTCAGGGAGTGGTTTCAGTGCCTGGGTGGAGTGCATACAATGGTCAAATGGGATCAGACAGTGCACAGCAAACAATAGGCAATGGTCAAACGTACGGAACTTCTCGTCAAGGTGAAACATCAAATGCAGGATCCCAAGGAGCATATTCTCAATACCGTTCTGGATCCGTTCCTGTAGGTTTCTATGCGTTGCAGAGGGAGAACATATTTCCTGAGAGACCTGGTCAGCCTGAATGCCAGTTTTACATGAAGACTGGAGATTGTAAGTTTGGTGCAGTCTGCCGATTTCATCATCCGCGTGAGAGGCTGATACCTGCTCCTGACTGTCTTTTGAGTCCCATTGGCCTTCCTCTGCGTCCTGGAGAGCCTTTGTGTGTCTTCTACTCACGATATGGCATTTGCAAATTTGGCCCTAGTTGTAAGTTTGACCACCCGATGGGAATCTTCACCTATAATATATCTACATCACCCTCAGCTGATGCCCCAGGACGGCGACTGCTGGGTTCTTCATCAGGAGCTGCTGCGTTAACTTTATCATCAGAAGGACTTGTTGAGTCAGGCTCATCAAAGTCAAGGAGGCTTTCATTATCAGAGACTAGACAGATTCCTTCTGGTGATGATAACATTGATGATGAGGGATAG 1296 0.4537 MEFDAAAAAAIPISPEYIIPQDAMWQMNLRSSETMEPGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIAAARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEPECAYYLRTGQCKFGNTCKFHHPQPNNMVLSMRGSPVYPTVHSPTTPGQQSYAAGITNWSSSSYIPSPRWQGPSSYAPLILPQGVVSVPGWSAYNGQMGSDSAQQTIGNGQTYGTSRQGETSNAGSQGAYSQYRSGSVPVGFYALQRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLIPAPDCLLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNISTSPSADAPGRRLLGSSSGAAALTLSSEGLVESGSSKSRRLSLSETRQIPSGDDNIDDEG* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0648 431 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 91 115 IPR000571 GO:0046872
Dod01g0648 431 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 293 318 IPR000571 GO:0046872
Dod01g0648 431 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 45 70 IPR000571 GO:0046872
Dod01g0648 431 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 137 161 IPR000571 GO:0046872
Dod01g0648 431 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 339 364 IPR000571 GO:0046872
Dod01g0648 431 PANTHER PROTEIN PHOSPHATASE RELATED 18 430 - -
Dod01g0648 431 SUPERFAMILY CCCH zinc finger 92 117 IPR036855 GO:0046872
Dod01g0648 431 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
Dod01g0648 431 SUPERFAMILY CCCH zinc finger 48 71 IPR036855 GO:0046872
Dod01g0648 431 MobiDBLite consensus disorder prediction 399 431 - -
Dod01g0648 431 MobiDBLite consensus disorder prediction 399 421 - -
Dod01g0648 431 Gene3D - 42 119 - -
Dod01g0648 431 Gene3D - 289 367 - -
Dod01g0648 431 SUPERFAMILY CCCH zinc finger 295 321 IPR036855 GO:0046872
Dod01g0648 431 SUPERFAMILY CCCH zinc finger 137 162 IPR036855 GO:0046872
Dod01g0648 431 ProSiteProfiles Zinc finger C3H1-type profile. 337 365 IPR000571 GO:0046872
Dod01g0648 431 ProSiteProfiles Zinc finger C3H1-type profile. 88 116 IPR000571 GO:0046872
Dod01g0648 431 MobiDBLite consensus disorder prediction 239 267 - -
Dod01g0648 431 Gene3D - 120 168 - -
Dod01g0648 431 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 18 430 - -
Dod01g0648 431 SUPERFAMILY CCCH zinc finger 340 364 IPR036855 GO:0046872
Dod01g0648 431 ProSiteProfiles Zinc finger C3H1-type profile. 291 319 IPR000571 GO:0046872
Dod01g0648 431 ProSiteProfiles Zinc finger C3H1-type profile. 44 71 IPR000571 GO:0046872
Dod01g0648 431 SMART c3hfinal6 337 364 IPR000571 GO:0046872
Dod01g0648 431 SMART c3hfinal6 43 70 IPR000571 GO:0046872
Dod01g0648 431 SMART c3hfinal6 134 161 IPR000571 GO:0046872
Dod01g0648 431 SMART c3hfinal6 291 318 IPR000571 GO:0046872
Dod01g0648 431 SMART c3hfinal6 88 115 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0648 Dod-Chr1 11148276 11154773 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0648 24 429 C2H2 Transcription Factor Family AT3G02830 64.649 0.0 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod01g0648 zf-CCCH 5.2e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0648 - - gmx:100786261 801.971