Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0643 ATGGGAATGATAGTGGAGGTTGATAGCGGTGAAGGAGACGGCGCCGTTTTGGTGCCGCCGCCGAATTTCTCGATGGTGGAGGACTGCATTTTCCGATCCAGCTTCCCTCACCCTTCCAATTTCCCTTTCCTCCAAACCCTAAACCTTCGATCCATCATATATTTGTGTCCAGAGCCATATCCGGAAGAAAATCTGGAGTTCCTTAAGTCACAGAATATTCGGCTCTTTCAATTTGGGATTGAGGGGAAGACGGAGGTTTCTCTACCCATTCTCAAGGATTCCATCATGGAAGCTCTGAAAGTTTTAATTGATGTGAGAAATCACCCAGTTTTAATCCATTGCAAACGTGGAAAGCATAGAACAGGCTGCCTTGTTGGTTGCTTGCGAAAATTGCAGAATTGGTGCCTGTCTTCTGTGTTTGAGGAGTACCAACGCTTTGCTGGCACTAAATCCAGGACGGCAGATTTAACATTCATAGAAATGTTCGACATAGCAAGCCTGAGGCAGTGCCTTTACAGCATCATCTACCAGTACCAAGGTTATGGCTCAAAGAAGCAGCGATTGTTGTACAAAGATGAGAATTTGCAGAAGCCCCGACTGGCATCATTTTAG 612 0.4575 MGMIVEVDSGEGDGAVLVPPPNFSMVEDCIFRSSFPHPSNFPFLQTLNLRSIIYLCPEPYPEENLEFLKSQNIRLFQFGIEGKTEVSLPILKDSIMEALKVLIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEEYQRFAGTKSRTADLTFIEMFDIASLRQCLYSIIYQYQGYGSKKQRLLYKDENLQKPRLASF* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0643 203 Pfam Tyrosine phosphatase family 17 167 IPR004861 -
Dod01g0643 203 ProSitePatterns Tyrosine specific protein phosphatases active site. 112 122 IPR016130 GO:0016311|GO:0016791
Dod01g0643 203 CDD PFA-DSP_Siw14 17 163 - -
Dod01g0643 203 ProSiteProfiles Dual specificity protein phosphatase domain profile. 22 187 IPR020422 GO:0006470|GO:0008138
Dod01g0643 203 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 17 163 IPR029021 -
Dod01g0643 203 PRINTS Plant and fungal dual specificity phosphatase signature 73 87 IPR020428 GO:0016791
Dod01g0643 203 PRINTS Plant and fungal dual specificity phosphatase signature 54 67 IPR020428 GO:0016791
Dod01g0643 203 PRINTS Plant and fungal dual specificity phosphatase signature 90 104 IPR020428 GO:0016791
Dod01g0643 203 PRINTS Plant and fungal dual specificity phosphatase signature 17 34 IPR020428 GO:0016791
Dod01g0643 203 PANTHER TYROSINE-PROTEIN PHOSPHATASE 14 186 - -
Dod01g0643 203 Gene3D Protein tyrosine phosphatase superfamily 16 166 IPR029021 -
Dod01g0643 203 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP5 14 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0643 Dod-Chr1 11113736 11116536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0643 1 199 Protein tyrosine phosphatase (PTP) family AT3G02800 69.347 2.77e-104 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0643 K18045 - gmx:100785746 363.229