Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0595 ATGGCTTCATCACTGGAGGAGCTTCTTAAGGAGGAAGGGTTCAGAGGAGGCAGAAGAGTGACAAGGACTAGATCCTGCTTCCACCATGGTGCTTTAACCGAGCCACTTTACTCTTTTGTAGAGCAGCATCGACGACATTCAGTATCAAGTGAAGGAATTGCAGCACACAGAACAAAGTATGATTCCTCACCACATCAGGCAAGAAGTGCACTGTCAAAAACTGATGACAGGAGGCCAAGGGATAAGCTTTTGTTGAGAGACAAAATACACGAGCGGTTGAAGAATGAAGCCGAGCTGAAAAAAACTCGTAGCAATGCAAATTCAGGCAAAGGAATTGATAGCAATTCATCAGAGTATATGCCAAGCAGGCTCAAAGAAGTGTCTAATGCAAAAGGAGGCAAAGAAAAGAATTTGGATGAACTTGTGGGGAATGAAAAATGGGGAGAAATGCTAGTCAAGGATGAAAAGTTTGGGAAGATGCCTAGCAGAACTTCTAGCATATATATGCATGGAAACTTAAGTGGAGACAGAAAGAATGTAAAGCCCCAGGAGAACTCATACACAAGATCTACAACTAACAAGAGCTTTGAAGATAGCAGCAACAAAAACCATGACCATGCTATTCTTTCAGCTTCTAATCTTGCTCTTGATGAAGTTGCTGTCCAAGCAGTAGTTTCCATTCTAAATGGATACATAAAACGTTTTCTGAAAGACGAGGAATTCAGGTCTACAATGCGCCACAATTGTTTCTCCTCCCTGAATTTTATTGAACTGGAAGAAGAGAACAATACTGGGACCAAAGTCATAACAAGTCTTGAGCAAGCAATTGAGACCGTAGAACAAACTGCTGAGCAATCCATGCCTTCTACATATCTGAAAAGAGCAGTGATGCAGCTAAGCATTATTACAGGTTTGAGTTTGAATGATTTGAAGCATGGATGTACATGTGGCATTCCGAATTATAAGCTGTCAGCCTGTGCTCATCTTTACCTCAGTGTTGTATATATGATACAGAGAAAAAACAAGGTGTCTGCAAAGCATCTCTTGCAAGTGTTTTGTGATTCACCTTTTCAGGCGCGAACGATATTGTTGCCTGAACTTTGGGAGCATCTATTTTCTCCACAACTTTCCCATTTGAAGGCATGGCACAACAAGGAAGCTGAAATTCTAGTTGATACACCAAGCAGAACAAGAAAGCTAAAACTGCTTCAGAAAGTGTATAATGAACAAGTGGATTCTGGGACTCATATATTTGCTGTATACTACAAAGATTGGCTCACTGAAGGAGTAGAATCTCCAACTATTCCTTCCATTGGCATTCCATCAATATCTATGGCAGGAAGTCAAAAGGGAAGTTCACTTGGTCATTCTTCAGAGTCTGCAAGCTCCACAGAACCATTCTCACCACAGCCAATGGTCAGCAAGAAACTGTATGATTCTGTCTTTGGTAGCTCCAGCAAAACTGGAGTTTATGAAGGTGAAGATGATACGGATGAAGATAACTTTGAAATGTTTATGCGAGGCTCGTATAGTTCCACCATTGTTAAACAAACATTAACATATGAGTCTGAGACAACTAAATTTACAGATCAAGATACTGAAGATTTCACTCAAAGTTCACCAGTTGATGCATTCCATCAGAAAGGAAATTCTGTGACAGCTGTAGAAGAATGGAAAGAAAGGAATCTCGGTGATAACATTAACAAATCCTTCTGCATACAAACTGATTTAGACAGCCGCATAGGTGATGCTCTACCCCTTGGTAAAGCAAACCAACTTACTCTCAAAAAGCCAAACCAGATAAGGTCTGCTCTTACAGGATCATATCTTCCTAGTATTCCACAGGAATTTATATGTCCTCTTACTGGTACTGTCTTTGAGGAACCAGTCACCCTGGAGACTGGTCAAACCTTTGAAAGAGAAGCCATCAAGGCATGGTTTGAAAAGGGAAACGCAACATGCCCGGTAACAGGAAATACCTTAGAAGGTGTGACCATGCCGCTTACCAACCTTATTTTGAAGCGTTTGATTGATAATTGGAAGTCAGAAAGTTTCAATCACCTTCTGGATTTTGTGTCTCAAACAGTTGAAAATTCAGAGGAACTTAAGATAAAAAATAGAGACGAGGCTGCTGTTTTCATGTTAGAGAGTTTTCTGTCCTCTTTGAATGAAGAGGAGAAAAGAATTTTTGCAAAGCATCTCATCTCTTCAGGAGTCCTATCATTTATTTTTAGTAGGTTTGAACTTGGAAATGTGGAAGAAAATTCACATGTGGTGGCACTCTTGCTAAATTGTATTGAAGCAGACTCTGGTTGCATATACAAGATAGCAAGAAGAGTTAACAGAAAATGTCTTCTTCAGCTTCTTCACAGCAAGGAGGTTACCCCAATAACAAACACAATATTATTGCTTACTGAACTTTTATCAATGAAGAGGAGAAAGGATGTTACTTCATTCATAAGTGACTTGGTGGGTGAAGATGTATTCAAAACACTGCGCATTCTGCTTATGCATCTTGAGAAATCTACTCCACATGAGAAGCCCCTAACTGCTGTTCTGTTGTTACACTTTGACCTATTGGTTGAGCCTCAAAAGTTTAGCATATACAGAGAGGTAGCTGTAAATGCCATTGCAGTGACACTTGATGCCAGCTTAAATAATGACAAGGCTCGAGTGAAGTGTTGCAGAGCCCTTCTAATATTGTGTGGCCATTTTTCCTCTAATGGAAAGATAATGACCAAAACTAGTATCTTAGAAGAAGCTGGTTATAACAACAAAGGATCAGAAGTAAAACCTCTTGGCAATGAAGAAGGGGGTCTAACACGGGATGTAATCACTTCATCGGAACATGAAGAAGAAATGGGAGAGGAGTTGCTAATGAACTTGCTAGAATCACTCATTGGTGATGGAGAAAGCCCATTTTTGAGGAGCTTATGCAGATGTTTAGATTCTAGACACCTAGATTTGGTGAAGGCGTGTCTAATAACTGTTACATGGTTGAGCTCCTCACTTTGTACAATATCAAATGCTGGATTGCATCTTCCTGCCTTCTTAGCCATCGTCTATCAGTTGAAAGGAATCCTTGAAAATGGAGAACTTGAGCTCAAGACTCTTGCATCTATGTCCTTGCTCAATTTCAGTAAAATATCAGAATGCAGAACTCTTTTGAAGACAATGGCAGAAGATATTGCTCCCTTTCTTTCTTCATAG 3210 0.4006 MASSLEELLKEEGFRGGRRVTRTRSCFHHGALTEPLYSFVEQHRRHSVSSEGIAAHRTKYDSSPHQARSALSKTDDRRPRDKLLLRDKIHERLKNEAELKKTRSNANSGKGIDSNSSEYMPSRLKEVSNAKGGKEKNLDELVGNEKWGEMLVKDEKFGKMPSRTSSIYMHGNLSGDRKNVKPQENSYTRSTTNKSFEDSSNKNHDHAILSASNLALDEVAVQAVVSILNGYIKRFLKDEEFRSTMRHNCFSSLNFIELEEENNTGTKVITSLEQAIETVEQTAEQSMPSTYLKRAVMQLSIITGLSLNDLKHGCTCGIPNYKLSACAHLYLSVVYMIQRKNKVSAKHLLQVFCDSPFQARTILLPELWEHLFSPQLSHLKAWHNKEAEILVDTPSRTRKLKLLQKVYNEQVDSGTHIFAVYYKDWLTEGVESPTIPSIGIPSISMAGSQKGSSLGHSSESASSTEPFSPQPMVSKKLYDSVFGSSSKTGVYEGEDDTDEDNFEMFMRGSYSSTIVKQTLTYESETTKFTDQDTEDFTQSSPVDAFHQKGNSVTAVEEWKERNLGDNINKSFCIQTDLDSRIGDALPLGKANQLTLKKPNQIRSALTGSYLPSIPQEFICPLTGTVFEEPVTLETGQTFEREAIKAWFEKGNATCPVTGNTLEGVTMPLTNLILKRLIDNWKSESFNHLLDFVSQTVENSEELKIKNRDEAAVFMLESFLSSLNEEEKRIFAKHLISSGVLSFIFSRFELGNVEENSHVVALLLNCIEADSGCIYKIARRVNRKCLLQLLHSKEVTPITNTILLLTELLSMKRRKDVTSFISDLVGEDVFKTLRILLMHLEKSTPHEKPLTAVLLLHFDLLVEPQKFSIYREVAVNAIAVTLDASLNNDKARVKCCRALLILCGHFSSNGKIMTKTSILEEAGYNNKGSEVKPLGNEEGGLTRDVITSSEHEEEMGEELLMNLLESLIGDGESPFLRSLCRCLDSRHLDLVKACLITVTWLSSSLCTISNAGLHLPAFLAIVYQLKGILENGELELKTLASMSLLNFSKISECRTLLKTMAEDIAPFLSS* 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0595 1069 MobiDBLite consensus disorder prediction 449 472 - -
Dod01g0595 1069 PANTHER OS04G0584500 PROTEIN 1 1068 - -
Dod01g0595 1069 SMART Ubox_2 616 680 IPR003613 GO:0004842|GO:0016567
Dod01g0595 1069 SUPERFAMILY RING/U-box 608 684 - -
Dod01g0595 1069 MobiDBLite consensus disorder prediction 104 123 - -
Dod01g0595 1069 MobiDBLite consensus disorder prediction 449 470 - -
Dod01g0595 1069 Pfam U-box domain 613 683 IPR003613 GO:0004842|GO:0016567
Dod01g0595 1069 MobiDBLite consensus disorder prediction 169 201 - -
Dod01g0595 1069 PANTHER OS04G0584500 PROTEIN 1 1068 - -
Dod01g0595 1069 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 612 687 IPR013083 -
Dod01g0595 1069 CDD RING-Ubox_PUB 617 658 IPR045210 -
Dod01g0595 1069 MobiDBLite consensus disorder prediction 70 103 - -
Dod01g0595 1069 MobiDBLite consensus disorder prediction 169 197 - -
Dod01g0595 1069 MobiDBLite consensus disorder prediction 48 137 - -
Dod01g0595 1069 SUPERFAMILY ARM repeat 672 1055 IPR016024 -
Dod01g0595 1069 ProSiteProfiles U-box domain profile. 612 687 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0595 Dod-Chr1 10556259 10561852 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0595 601 728 U-box Gene Family AT5G42340 34.375 1.84e-14 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0595 - - gmx:100820501 1346.64